miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 159501 0.66 0.907796
Target:  5'- cGUGCG-CGUcUCCCAAUGGCUagGCGUu -3'
miRNA:   3'- uUAUGCgGCAuGGGGUUGCCGG--CGCG- -5'
29981 3' -58 NC_006273.1 + 120835 0.66 0.889207
Target:  5'- --gACGgUGgacucgGCCUUAagGCGGCCGCGUg -3'
miRNA:   3'- uuaUGCgGCa-----UGGGGU--UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 8344 0.66 0.895616
Target:  5'- ---cCGCCGUGCCgCCGGuuggUGGCUG-GCg -3'
miRNA:   3'- uuauGCGGCAUGG-GGUU----GCCGGCgCG- -5'
29981 3' -58 NC_006273.1 + 105373 0.66 0.919107
Target:  5'- uGAUGuCGCCGUcACCCgAGC--CCGUGCa -3'
miRNA:   3'- -UUAU-GCGGCA-UGGGgUUGccGGCGCG- -5'
29981 3' -58 NC_006273.1 + 234298 0.66 0.901813
Target:  5'- ---uUGCCGcUACucggaggggcgCCCGGCGGCC-CGCg -3'
miRNA:   3'- uuauGCGGC-AUG-----------GGGUUGCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 195168 0.66 0.919107
Target:  5'- --gACGCggguugugcagUGUGCCCCGG-GGCC-CGCg -3'
miRNA:   3'- uuaUGCG-----------GCAUGGGGUUgCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 232870 0.66 0.889207
Target:  5'- ----aGCUaacUGCCCguGCGGCuCGCGCg -3'
miRNA:   3'- uuaugCGGc--AUGGGguUGCCG-GCGCG- -5'
29981 3' -58 NC_006273.1 + 134886 0.66 0.889207
Target:  5'- gGAU-CGCCGUGUgCCAACcgGGCUGCGa -3'
miRNA:   3'- -UUAuGCGGCAUGgGGUUG--CCGGCGCg -5'
29981 3' -58 NC_006273.1 + 33330 0.66 0.889207
Target:  5'- --aGCGCCGagcugaACUgCGGCaGCCGCGUg -3'
miRNA:   3'- uuaUGCGGCa-----UGGgGUUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 215962 0.66 0.907796
Target:  5'- cGUGCaugGCUuUugCUCGcCGGCCGCGCu -3'
miRNA:   3'- uUAUG---CGGcAugGGGUuGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 135410 0.66 0.907796
Target:  5'- ---uCGCaCGcACCUgugugaucugggCAGCGGCUGCGCg -3'
miRNA:   3'- uuauGCG-GCaUGGG------------GUUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 34474 0.66 0.913561
Target:  5'- -cUGCGCCucGUGCaCCaGACGGCggaaaGCGCc -3'
miRNA:   3'- uuAUGCGG--CAUG-GGgUUGCCGg----CGCG- -5'
29981 3' -58 NC_006273.1 + 189018 0.66 0.907796
Target:  5'- --gGCGUCGgggGCCUgugCGACGacaGCCGCGUg -3'
miRNA:   3'- uuaUGCGGCa--UGGG---GUUGC---CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 117549 0.66 0.907796
Target:  5'- --aGCGCCcgucauGUAUCCCGGCG-CCGUaGCg -3'
miRNA:   3'- uuaUGCGG------CAUGGGGUUGCcGGCG-CG- -5'
29981 3' -58 NC_006273.1 + 92178 0.66 0.889207
Target:  5'- --aACGUCGUacaagcuacacACCCCAAaaacCCGCGCg -3'
miRNA:   3'- uuaUGCGGCA-----------UGGGGUUgcc-GGCGCG- -5'
29981 3' -58 NC_006273.1 + 126978 0.66 0.895616
Target:  5'- --gACGUCGUACCugacguggagaCCGcggugGCGGCCG-GCa -3'
miRNA:   3'- uuaUGCGGCAUGG-----------GGU-----UGCCGGCgCG- -5'
29981 3' -58 NC_006273.1 + 86702 0.66 0.907796
Target:  5'- --gGCGaCGgaggaGCUCCAGCaGCUGCGCg -3'
miRNA:   3'- uuaUGCgGCa----UGGGGUUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 136746 0.66 0.915806
Target:  5'- uGUACGCCaccgauccgcacgACCgCGACgaGGUCGCGCg -3'
miRNA:   3'- uUAUGCGGca-----------UGGgGUUG--CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 104869 0.66 0.907796
Target:  5'- --aGgGCUGUuuGCCUCAcacGCGGCCG-GCg -3'
miRNA:   3'- uuaUgCGGCA--UGGGGU---UGCCGGCgCG- -5'
29981 3' -58 NC_006273.1 + 219751 0.66 0.889207
Target:  5'- --gGC-CCGUAUCguccugaugaCCAGCGGCCucGCGCu -3'
miRNA:   3'- uuaUGcGGCAUGG----------GGUUGCCGG--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.