miRNA display CGI


Results 61 - 80 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 144110 0.66 0.907796
Target:  5'- cGUACGCCuGUGCUuuguuaCGACGGCgGgGUg -3'
miRNA:   3'- uUAUGCGG-CAUGGg-----GUUGCCGgCgCG- -5'
29981 3' -58 NC_006273.1 + 39405 0.66 0.901813
Target:  5'- ---uUGCCGcUACucggaggggcgCCCGGCGGCC-CGCg -3'
miRNA:   3'- uuauGCGGC-AUG-----------GGGUUGCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 36481 0.66 0.888554
Target:  5'- --gGCuGgCGUGCUguuuuccguguugCCGACGGCgGCGCg -3'
miRNA:   3'- uuaUG-CgGCAUGG-------------GGUUGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 15205 0.66 0.898121
Target:  5'- uGUACGCCauccagauggacgACCCCAaccacuACGuGCgGCGCg -3'
miRNA:   3'- uUAUGCGGca-----------UGGGGU------UGC-CGgCGCG- -5'
29981 3' -58 NC_006273.1 + 114205 0.66 0.901813
Target:  5'- -cUGCGUCaGUACgaUCCcgUGGCUGCGCu -3'
miRNA:   3'- uuAUGCGG-CAUG--GGGuuGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 21319 0.66 0.901813
Target:  5'- --cGCGcCCGUuuUCaCAGCaGCCGCGCu -3'
miRNA:   3'- uuaUGC-GGCAugGG-GUUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 202147 0.66 0.901203
Target:  5'- ---cCGCCGUcgucgccGCCCCGG-GGCCcucgguGCGCu -3'
miRNA:   3'- uuauGCGGCA-------UGGGGUUgCCGG------CGCG- -5'
29981 3' -58 NC_006273.1 + 196984 0.66 0.889207
Target:  5'- ---uUGCCGccACCgCAGCGGCgGCGa -3'
miRNA:   3'- uuauGCGGCa-UGGgGUUGCCGgCGCg -5'
29981 3' -58 NC_006273.1 + 70086 0.66 0.907796
Target:  5'- --gACGCUGUugaGCUCgGACacagcGCCGCGCu -3'
miRNA:   3'- uuaUGCGGCA---UGGGgUUGc----CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 82863 0.66 0.906024
Target:  5'- --gGCGCCGUGCgcauagccaacgcgCCCGAgGuaCGCGUc -3'
miRNA:   3'- uuaUGCGGCAUG--------------GGGUUgCcgGCGCG- -5'
29981 3' -58 NC_006273.1 + 163797 0.66 0.889207
Target:  5'- --cGCGCCGggACCCaCggUGGCCaacaaGCGg -3'
miRNA:   3'- uuaUGCGGCa-UGGG-GuuGCCGG-----CGCg -5'
29981 3' -58 NC_006273.1 + 165685 0.66 0.912994
Target:  5'- ---uCGCCGcUGCCUacgcgauCGGCGGCCGUcaGCu -3'
miRNA:   3'- uuauGCGGC-AUGGG-------GUUGCCGGCG--CG- -5'
29981 3' -58 NC_006273.1 + 91179 0.66 0.895616
Target:  5'- ---cCGCCGUGCCggucgucgcaCCGcuCGGCCacGCGCu -3'
miRNA:   3'- uuauGCGGCAUGG----------GGUu-GCCGG--CGCG- -5'
29981 3' -58 NC_006273.1 + 15420 0.66 0.913561
Target:  5'- --gACGCCGcgUugCCCGAUGaGCgacgcgaGCGCg -3'
miRNA:   3'- uuaUGCGGC--AugGGGUUGC-CGg------CGCG- -5'
29981 3' -58 NC_006273.1 + 156330 0.66 0.913561
Target:  5'- --gACGCCGcagGCUCUggUGG-CGCGUg -3'
miRNA:   3'- uuaUGCGGCa--UGGGGuuGCCgGCGCG- -5'
29981 3' -58 NC_006273.1 + 1208 0.66 0.891796
Target:  5'- --gGCGCCGUGuggcgcgcggcguuuCUggCCAACagcacgGGCCGCGCc -3'
miRNA:   3'- uuaUGCGGCAU---------------GG--GGUUG------CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 64749 0.66 0.913561
Target:  5'- cAUGCuGCC-UAUCUacgaGACGGCCGCGa -3'
miRNA:   3'- uUAUG-CGGcAUGGGg---UUGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 212651 0.66 0.919107
Target:  5'- --aGCGguaCCGUACCUCGGCGacgcuccauGCCgGCGCc -3'
miRNA:   3'- uuaUGC---GGCAUGGGGUUGC---------CGG-CGCG- -5'
29981 3' -58 NC_006273.1 + 157037 0.66 0.913561
Target:  5'- --gGCGCgGaaACCaCCGuCGGCCGUGUg -3'
miRNA:   3'- uuaUGCGgCa-UGG-GGUuGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 45586 0.66 0.913561
Target:  5'- --aGCuGCCGUGCaggcggCC-AUGGCCGCGg -3'
miRNA:   3'- uuaUG-CGGCAUGg-----GGuUGCCGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.