miRNA display CGI


Results 81 - 100 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 57826 0.66 0.889207
Target:  5'- --aACGCUGcgaagACgCCCGGCGucuaauaauacaGCCGCGCc -3'
miRNA:   3'- uuaUGCGGCa----UG-GGGUUGC------------CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 126978 0.66 0.895616
Target:  5'- --gACGUCGUACCugacguggagaCCGcggugGCGGCCG-GCa -3'
miRNA:   3'- uuaUGCGGCAUGG-----------GGU-----UGCCGGCgCG- -5'
29981 3' -58 NC_006273.1 + 95224 0.66 0.901813
Target:  5'- --gGCGCCucggACCCCAccaGGCUGUGg -3'
miRNA:   3'- uuaUGCGGca--UGGGGUug-CCGGCGCg -5'
29981 3' -58 NC_006273.1 + 117220 0.66 0.889207
Target:  5'- --cAgGCCGccACgCCGGCGGCUgggGCGCg -3'
miRNA:   3'- uuaUgCGGCa-UGgGGUUGCCGG---CGCG- -5'
29981 3' -58 NC_006273.1 + 189018 0.66 0.907796
Target:  5'- --gGCGUCGgggGCCUgugCGACGacaGCCGCGUg -3'
miRNA:   3'- uuaUGCGGCa--UGGG---GUUGC---CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 52304 0.66 0.889207
Target:  5'- --aGCGCCaccUugCCCAACG-CCGaCGCc -3'
miRNA:   3'- uuaUGCGGc--AugGGGUUGCcGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 92178 0.66 0.889207
Target:  5'- --aACGUCGUacaagcuacacACCCCAAaaacCCGCGCg -3'
miRNA:   3'- uuaUGCGGCA-----------UGGGGUUgcc-GGCGCG- -5'
29981 3' -58 NC_006273.1 + 120835 0.66 0.889207
Target:  5'- --gACGgUGgacucgGCCUUAagGCGGCCGCGUg -3'
miRNA:   3'- uuaUGCgGCa-----UGGGGU--UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 33330 0.66 0.889207
Target:  5'- --aGCGCCGagcugaACUgCGGCaGCCGCGUg -3'
miRNA:   3'- uuaUGCGGCa-----UGGgGUUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 152222 0.67 0.86152
Target:  5'- --gGCGUCGcUGCCCC---GGUCGUGCu -3'
miRNA:   3'- uuaUGCGGC-AUGGGGuugCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 103918 0.67 0.868741
Target:  5'- --cACGgCGUACgCCAcgaaaGCGGacaCGCGCu -3'
miRNA:   3'- uuaUGCgGCAUGgGGU-----UGCCg--GCGCG- -5'
29981 3' -58 NC_006273.1 + 65419 0.67 0.86152
Target:  5'- --aACGCCGcaaggACCUCAGCGGuaGCa- -3'
miRNA:   3'- uuaUGCGGCa----UGGGGUUGCCggCGcg -5'
29981 3' -58 NC_006273.1 + 31248 0.67 0.867312
Target:  5'- cGGUACGCCGgguaGCCgCgcaggucaacaaccaGagccguucggggcguGCGGCCGCGCu -3'
miRNA:   3'- -UUAUGCGGCa---UGGgG---------------U---------------UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 112553 0.67 0.875765
Target:  5'- --gACGCgGUcgccGCgUCAGCGGCCGC-Cg -3'
miRNA:   3'- uuaUGCGgCA----UGgGGUUGCCGGCGcG- -5'
29981 3' -58 NC_006273.1 + 195607 0.67 0.875765
Target:  5'- --gAUGCaCG-GCCCCAA-GGCgGCGCc -3'
miRNA:   3'- uuaUGCG-GCaUGGGGUUgCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 46336 0.67 0.882588
Target:  5'- -cUACGCCGccgguccggGCCCCcaccacGCGGCUGuCGUc -3'
miRNA:   3'- uuAUGCGGCa--------UGGGGu-----UGCCGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 32668 0.67 0.875765
Target:  5'- --cGCGUCGcagGCCCgAGCGGuuGcCGUg -3'
miRNA:   3'- uuaUGCGGCa--UGGGgUUGCCggC-GCG- -5'
29981 3' -58 NC_006273.1 + 221553 0.67 0.882588
Target:  5'- gAAUGCGuCCGUcggUCCCGACGuCCGuCGCc -3'
miRNA:   3'- -UUAUGC-GGCAu--GGGGUUGCcGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 101964 0.67 0.882588
Target:  5'- --cGCGCCGUcGCgUCGcuugACGGCCaCGCa -3'
miRNA:   3'- uuaUGCGGCA-UGgGGU----UGCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 20511 0.67 0.875765
Target:  5'- --aACGUCGUgaGCCa-GACGGCCaCGCg -3'
miRNA:   3'- uuaUGCGGCA--UGGggUUGCCGGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.