miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 38107 0.74 0.502019
Target:  5'- --gGCGCCGacucgcGCCCCAGCG-CCaGCGCg -3'
miRNA:   3'- uuaUGCGGCa-----UGGGGUUGCcGG-CGCG- -5'
29981 3' -58 NC_006273.1 + 94525 0.74 0.483617
Target:  5'- --cACcUCGcGCCCCGagaaGCGGCCGCGCa -3'
miRNA:   3'- uuaUGcGGCaUGGGGU----UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 67726 0.74 0.483617
Target:  5'- --gGCgGCCG-ACCCCGccguuGCGGCCGcCGCu -3'
miRNA:   3'- uuaUG-CGGCaUGGGGU-----UGCCGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 38188 0.74 0.502019
Target:  5'- --gACGCCGaGCCCgCGccGCGGCCGCu- -3'
miRNA:   3'- uuaUGCGGCaUGGG-GU--UGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 233000 0.74 0.502019
Target:  5'- --gGCGCCGacucgcGCCCCAGCG-CCaGCGCg -3'
miRNA:   3'- uuaUGCGGCa-----UGGGGUUGCcGG-CGCG- -5'
29981 3' -58 NC_006273.1 + 103539 0.73 0.520721
Target:  5'- ---cCGCCGUagccggccaGCCCCA--GGCCGUGCg -3'
miRNA:   3'- uuauGCGGCA---------UGGGGUugCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 19983 0.73 0.530174
Target:  5'- --cACGCCGUaucACCCgAACuGCCGuCGCg -3'
miRNA:   3'- uuaUGCGGCA---UGGGgUUGcCGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 171311 0.73 0.530174
Target:  5'- ---cCGCCGcUGCUCUGAUGGCCGCaGCu -3'
miRNA:   3'- uuauGCGGC-AUGGGGUUGCCGGCG-CG- -5'
29981 3' -58 NC_006273.1 + 2406 0.73 0.549261
Target:  5'- --gGCGCCc-GCCgCCGA-GGCCGCGCg -3'
miRNA:   3'- uuaUGCGGcaUGG-GGUUgCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 194519 0.73 0.539689
Target:  5'- --aACGCCGUcgccGCCCCGAaaagcgaaGcGCUGCGCa -3'
miRNA:   3'- uuaUGCGGCA----UGGGGUUg-------C-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 188495 0.73 0.520721
Target:  5'- --gACGCgCGcaGCCCCAGCGcGUCGCGUa -3'
miRNA:   3'- uuaUGCG-GCa-UGGGGUUGC-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 98622 0.73 0.520721
Target:  5'- cGUACGCgCG-ACCUCGucGCGGUCGUGCg -3'
miRNA:   3'- uUAUGCG-GCaUGGGGU--UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 234457 0.73 0.539689
Target:  5'- --aACGCCGUcgccGCCCCGAaaagcgaaGcGCUGCGCa -3'
miRNA:   3'- uuaUGCGGCA----UGGGGUUg-------C-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 913 0.73 0.549261
Target:  5'- --cGCGCCccccGCCCCucggucGCGGCCGCGg -3'
miRNA:   3'- uuaUGCGGca--UGGGGu-----UGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 101338 0.73 0.565651
Target:  5'- cGUAuCGCCGUggagggcaacaccaACCaggCGGCGGCCGUGCg -3'
miRNA:   3'- uUAU-GCGGCA--------------UGGg--GUUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 195805 0.73 0.549261
Target:  5'- --cGCGCCccccGCCCCucggucGCGGCCGCGg -3'
miRNA:   3'- uuaUGCGGca--UGGGGu-----UGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 197299 0.73 0.549261
Target:  5'- --gGCGCCc-GCCgCCGA-GGCCGCGCg -3'
miRNA:   3'- uuaUGCGGcaUGG-GGUUgCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 196451 0.72 0.597795
Target:  5'- --cACGCUG-AUCCUAGCGGC-GCGCg -3'
miRNA:   3'- uuaUGCGGCaUGGGGUUGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 75260 0.72 0.627241
Target:  5'- --aGCGCUGgccGCCgCGGCGGCCGCc- -3'
miRNA:   3'- uuaUGCGGCa--UGGgGUUGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 153345 0.72 0.606615
Target:  5'- ---cCGCCGcUGCCgcuucguccgaggCCGGCGGCaCGCGCg -3'
miRNA:   3'- uuauGCGGC-AUGG-------------GGUUGCCG-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.