miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 108871 0.72 0.627241
Target:  5'- --cGCGCacgaGUACCaCAACuGGCUGCGCu -3'
miRNA:   3'- uuaUGCGg---CAUGGgGUUG-CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 153345 0.72 0.606615
Target:  5'- ---cCGCCGcUGCCgcuucguccgaggCCGGCGGCaCGCGCg -3'
miRNA:   3'- uuauGCGGC-AUGG-------------GGUUGCCG-GCGCG- -5'
29981 3' -58 NC_006273.1 + 196451 0.72 0.597795
Target:  5'- --cACGCUG-AUCCUAGCGGC-GCGCg -3'
miRNA:   3'- uuaUGCGGCaUGGGGUUGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 68223 0.72 0.627241
Target:  5'- ---cCGCCGUgGCCaCCAACGGCgGCa- -3'
miRNA:   3'- uuauGCGGCA-UGG-GGUUGCCGgCGcg -5'
29981 3' -58 NC_006273.1 + 103025 0.72 0.57827
Target:  5'- --aACGCCGcgGCggCAGCGGCCGCGg -3'
miRNA:   3'- uuaUGCGGCa-UGggGUUGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 38791 0.72 0.617413
Target:  5'- --aGCGCCGUcGCCUCcuCGGC-GCGCa -3'
miRNA:   3'- uuaUGCGGCA-UGGGGuuGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 197182 0.72 0.597795
Target:  5'- ---cCGCCGU-CUCCGgaugaGCGGCCGCGg -3'
miRNA:   3'- uuauGCGGCAuGGGGU-----UGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 140182 0.72 0.597795
Target:  5'- --gGCGCCG-ACCCCGgcuggGCGGCCGaUGg -3'
miRNA:   3'- uuaUGCGGCaUGGGGU-----UGCCGGC-GCg -5'
29981 3' -58 NC_006273.1 + 1558 0.72 0.597795
Target:  5'- --cACGCUG-AUCCUAGCGGC-GCGCg -3'
miRNA:   3'- uuaUGCGGCaUGGGGUUGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 168617 0.71 0.637073
Target:  5'- --aGCGCCGaGCCgCGGCugcccgGGUCGCGCa -3'
miRNA:   3'- uuaUGCGGCaUGGgGUUG------CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 39136 0.71 0.637073
Target:  5'- -uUACGCCGUGCCUuucaCGACGccgggaaaGCCGgGCu -3'
miRNA:   3'- uuAUGCGGCAUGGG----GUUGC--------CGGCgCG- -5'
29981 3' -58 NC_006273.1 + 45246 0.71 0.637073
Target:  5'- -uUGC-CCGUGCcgCCCGGCGGCUGCucGCg -3'
miRNA:   3'- uuAUGcGGCAUG--GGGUUGCCGGCG--CG- -5'
29981 3' -58 NC_006273.1 + 36551 0.71 0.6469
Target:  5'- --gAgGCCGagaGCCCCAgaucGCGcGCCGUGCg -3'
miRNA:   3'- uuaUgCGGCa--UGGGGU----UGC-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 82500 0.71 0.6469
Target:  5'- --cGCGCCacccacgGCCCCAAUGGCUaCGCc -3'
miRNA:   3'- uuaUGCGGca-----UGGGGUUGCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 77941 0.71 0.686029
Target:  5'- ---uCGCCGUugCacguaguuuccaCCAACGGCUGCGg -3'
miRNA:   3'- uuauGCGGCAugG------------GGUUGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 68335 0.71 0.6469
Target:  5'- cAUGCgGCUGcacgACUCC-ACGGCCGUGCa -3'
miRNA:   3'- uUAUG-CGGCa---UGGGGuUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 70327 0.71 0.6469
Target:  5'- --cGCGCCGUGCgucugCCCGugagcaccGCuGCCGCGCc -3'
miRNA:   3'- uuaUGCGGCAUG-----GGGU--------UGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 213458 0.71 0.6469
Target:  5'- --aGCGCCGUcuACCcgaugCCGGCGGCUGCa- -3'
miRNA:   3'- uuaUGCGGCA--UGG-----GGUUGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 28808 0.71 0.637073
Target:  5'- -cUACGCCGggGCCCUA--GGCCGCa- -3'
miRNA:   3'- uuAUGCGGCa-UGGGGUugCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 175087 0.71 0.6469
Target:  5'- gAGU-CGCCGUcUCCCGACGGCaCGcCGUc -3'
miRNA:   3'- -UUAuGCGGCAuGGGGUUGCCG-GC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.