miRNA display CGI


Results 61 - 80 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 150530 0.71 0.67629
Target:  5'- ----aGCCcuccACCCUGACGGCCGcCGCg -3'
miRNA:   3'- uuaugCGGca--UGGGGUUGCCGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 180053 0.71 0.67629
Target:  5'- --gGCGCCGUcuucggcgugcAUCCCGauacGCGGCagGCGCa -3'
miRNA:   3'- uuaUGCGGCA-----------UGGGGU----UGCCGg-CGCG- -5'
29981 3' -58 NC_006273.1 + 13585 0.71 0.666517
Target:  5'- ---cCGCCGggcgGCCCgGGCcGCCGUGCu -3'
miRNA:   3'- uuauGCGGCa---UGGGgUUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 85412 0.71 0.666517
Target:  5'- --gACGCCGUAgCCgAuauCGGCCGC-Ca -3'
miRNA:   3'- uuaUGCGGCAUgGGgUu--GCCGGCGcG- -5'
29981 3' -58 NC_006273.1 + 215428 0.71 0.656718
Target:  5'- --gAUGCUGUGaugacggcggUCUCAACGGCCGCGg -3'
miRNA:   3'- uuaUGCGGCAU----------GGGGUUGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 168617 0.71 0.637073
Target:  5'- --aGCGCCGaGCCgCGGCugcccgGGUCGCGCa -3'
miRNA:   3'- uuaUGCGGCaUGGgGUUG------CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 28808 0.71 0.637073
Target:  5'- -cUACGCCGggGCCCUA--GGCCGCa- -3'
miRNA:   3'- uuAUGCGGCa-UGGGGUugCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 60050 0.7 0.69476
Target:  5'- uGUACGCCGcaaaagcgaaacuUGCCCCAGuaGCCGUGa -3'
miRNA:   3'- uUAUGCGGC-------------AUGGGGUUgcCGGCGCg -5'
29981 3' -58 NC_006273.1 + 124423 0.7 0.695728
Target:  5'- --gGCGacaCGUGCU---GCGGCCGCGCg -3'
miRNA:   3'- uuaUGCg--GCAUGGgguUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 23335 0.7 0.705378
Target:  5'- uGUugGCCcUAcggaucCCCCAgcgacugugucaGCGGCUGCGCa -3'
miRNA:   3'- uUAugCGGcAU------GGGGU------------UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 72359 0.7 0.743324
Target:  5'- uGAUGCGCC-UGCUguCCGGCGcCCGCGUg -3'
miRNA:   3'- -UUAUGCGGcAUGG--GGUUGCcGGCGCG- -5'
29981 3' -58 NC_006273.1 + 43028 0.7 0.705378
Target:  5'- ----aGCCGcgacGCgCC-ACGGCCGCGCa -3'
miRNA:   3'- uuaugCGGCa---UGgGGuUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 94083 0.7 0.743324
Target:  5'- cAUGCGCCGguauuuUUCCAcuggGCGGCCGCa- -3'
miRNA:   3'- uUAUGCGGCau----GGGGU----UGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 103779 0.7 0.743324
Target:  5'- --cGCGCgCGUGCCa----GGCCGUGCg -3'
miRNA:   3'- uuaUGCG-GCAUGGgguugCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 73134 0.7 0.743324
Target:  5'- -cUGCGCCGcaaacUGCgCCggUGGCUGCGa -3'
miRNA:   3'- uuAUGCGGC-----AUGgGGuuGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 23646 0.7 0.695728
Target:  5'- --gGCGCCGcaaacaucUACCUCGACG-UCGCGCu -3'
miRNA:   3'- uuaUGCGGC--------AUGGGGUUGCcGGCGCG- -5'
29981 3' -58 NC_006273.1 + 233235 0.7 0.742391
Target:  5'- ---cCGCCGUcgcguccGCCCCGACcaCCGCGUg -3'
miRNA:   3'- uuauGCGGCA-------UGGGGUUGccGGCGCG- -5'
29981 3' -58 NC_006273.1 + 198870 0.7 0.695728
Target:  5'- cGGUcCGCCGgu-CUCGACGGaCCGCGCc -3'
miRNA:   3'- -UUAuGCGGCaugGGGUUGCC-GGCGCG- -5'
29981 3' -58 NC_006273.1 + 76727 0.7 0.695728
Target:  5'- cAGUGCGCCGgcaACauccgcgucaCCAACgaGGCCGUGCu -3'
miRNA:   3'- -UUAUGCGGCa--UGg---------GGUUG--CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 233802 0.7 0.743324
Target:  5'- --cGCGCCGUGCCgaaaCCAcucgucCGcGUCGCGCg -3'
miRNA:   3'- uuaUGCGGCAUGG----GGUu-----GC-CGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.