miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 6364 1.1 0.002683
Target:  5'- gAAUACGCCGUACCCCAACGGCCGCGCa -3'
miRNA:   3'- -UUAUGCGGCAUGGGGUUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 1855 0.83 0.151819
Target:  5'- --gGCGCCGcACCCCGcgucgcugcugACGGCCGUGCg -3'
miRNA:   3'- uuaUGCGGCaUGGGGU-----------UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 196747 0.83 0.151819
Target:  5'- --gGCGCCGcACCCCGcgucgcugcugACGGCCGUGCg -3'
miRNA:   3'- uuaUGCGGCaUGGGGU-----------UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 193997 0.8 0.253027
Target:  5'- --gGCGCCGUugcccggggauaugaACCCCGccaACuGGCCGCGCg -3'
miRNA:   3'- uuaUGCGGCA---------------UGGGGU---UG-CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 68196 0.79 0.262486
Target:  5'- -uUACGCCG-GCCUCcGCGGCCGCuGCg -3'
miRNA:   3'- uuAUGCGGCaUGGGGuUGCCGGCG-CG- -5'
29981 3' -58 NC_006273.1 + 173803 0.79 0.262486
Target:  5'- --cGCGCgGUGgCCaAACGGCCGCGCg -3'
miRNA:   3'- uuaUGCGgCAUgGGgUUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 154994 0.79 0.280995
Target:  5'- -cUGCGCCGcUGCCgCCGccACGGCCGcCGCu -3'
miRNA:   3'- uuAUGCGGC-AUGG-GGU--UGCCGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 118351 0.78 0.293901
Target:  5'- --cACGCUGUugCCCAACaGGCCGUaGCu -3'
miRNA:   3'- uuaUGCGGCAugGGGUUG-CCGGCG-CG- -5'
29981 3' -58 NC_006273.1 + 190598 0.78 0.314118
Target:  5'- ---cCGCCG-GCgCCCAuCGGCCGCGCg -3'
miRNA:   3'- uuauGCGGCaUG-GGGUuGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 124038 0.78 0.321087
Target:  5'- --cACGCCGcugaaCCCAgcggcGCGGCCGCGCu -3'
miRNA:   3'- uuaUGCGGCaug--GGGU-----UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 152600 0.76 0.384138
Target:  5'- -cUGCGCCagcgggugugucucgGUGgCCCGcugcACGGCCGCGCg -3'
miRNA:   3'- uuAUGCGG---------------CAUgGGGU----UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 204338 0.76 0.388945
Target:  5'- gGGUGCGCCG-ACCUUgaaAugGGUCGCGCu -3'
miRNA:   3'- -UUAUGCGGCaUGGGG---UugCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 92240 0.76 0.397043
Target:  5'- --cGCGCCGUGCCCgucuccugaaaGACGGCCacacaGCGCu -3'
miRNA:   3'- uuaUGCGGCAUGGGg----------UUGCCGG-----CGCG- -5'
29981 3' -58 NC_006273.1 + 162587 0.76 0.411056
Target:  5'- -cUGCGCCGUcugcggcucuacccGCCCgAGCGGCUGCacGCg -3'
miRNA:   3'- uuAUGCGGCA--------------UGGGgUUGCCGGCG--CG- -5'
29981 3' -58 NC_006273.1 + 90352 0.75 0.429639
Target:  5'- ----gGCCGUACCgCCGGCGcugggauGCCGCGCc -3'
miRNA:   3'- uuaugCGGCAUGG-GGUUGC-------CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 154554 0.75 0.44783
Target:  5'- --gGCGCUGcGCCCC-GCGGCCGaCGUc -3'
miRNA:   3'- uuaUGCGGCaUGGGGuUGCCGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 39455 0.75 0.456641
Target:  5'- --gACGCCGUGgCCCGGCGucGCCguagGCGCa -3'
miRNA:   3'- uuaUGCGGCAUgGGGUUGC--CGG----CGCG- -5'
29981 3' -58 NC_006273.1 + 234348 0.75 0.456641
Target:  5'- --gACGCCGUGgCCCGGCGucGCCguagGCGCa -3'
miRNA:   3'- uuaUGCGGCAUgGGGUUGC--CGG----CGCG- -5'
29981 3' -58 NC_006273.1 + 154421 0.75 0.465545
Target:  5'- ----gGCCGUGCCCgacgaCAGCucguGGCCGCGCu -3'
miRNA:   3'- uuaugCGGCAUGGG-----GUUG----CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 125245 0.75 0.465545
Target:  5'- -uUGCuGCUGUAUCCC-ACGGCCGUGg -3'
miRNA:   3'- uuAUG-CGGCAUGGGGuUGCCGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.