miRNA display CGI


Results 61 - 80 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 215428 0.71 0.656718
Target:  5'- --gAUGCUGUGaugacggcggUCUCAACGGCCGCGg -3'
miRNA:   3'- uuaUGCGGCAU----------GGGGUUGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 13585 0.71 0.666517
Target:  5'- ---cCGCCGggcgGCCCgGGCcGCCGUGCu -3'
miRNA:   3'- uuauGCGGCa---UGGGgUUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 175145 0.71 0.666517
Target:  5'- ---cCGCCGUGCCCagucGCGGUggaCGCGUg -3'
miRNA:   3'- uuauGCGGCAUGGGgu--UGCCG---GCGCG- -5'
29981 3' -58 NC_006273.1 + 85412 0.71 0.666517
Target:  5'- --gACGCCGUAgCCgAuauCGGCCGC-Ca -3'
miRNA:   3'- uuaUGCGGCAUgGGgUu--GCCGGCGcG- -5'
29981 3' -58 NC_006273.1 + 150530 0.71 0.67629
Target:  5'- ----aGCCcuccACCCUGACGGCCGcCGCg -3'
miRNA:   3'- uuaugCGGca--UGGGGUUGCCGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 180053 0.71 0.67629
Target:  5'- --gGCGCCGUcuucggcgugcAUCCCGauacGCGGCagGCGCa -3'
miRNA:   3'- uuaUGCGGCA-----------UGGGGU----UGCCGg-CGCG- -5'
29981 3' -58 NC_006273.1 + 77941 0.71 0.686029
Target:  5'- ---uCGCCGUugCacguaguuuccaCCAACGGCUGCGg -3'
miRNA:   3'- uuauGCGGCAugG------------GGUUGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 60050 0.7 0.69476
Target:  5'- uGUACGCCGcaaaagcgaaacuUGCCCCAGuaGCCGUGa -3'
miRNA:   3'- uUAUGCGGC-------------AUGGGGUUgcCGGCGCg -5'
29981 3' -58 NC_006273.1 + 198870 0.7 0.695728
Target:  5'- cGGUcCGCCGgu-CUCGACGGaCCGCGCc -3'
miRNA:   3'- -UUAuGCGGCaugGGGUUGCC-GGCGCG- -5'
29981 3' -58 NC_006273.1 + 124423 0.7 0.695728
Target:  5'- --gGCGacaCGUGCU---GCGGCCGCGCg -3'
miRNA:   3'- uuaUGCg--GCAUGGgguUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 76727 0.7 0.695728
Target:  5'- cAGUGCGCCGgcaACauccgcgucaCCAACgaGGCCGUGCu -3'
miRNA:   3'- -UUAUGCGGCa--UGg---------GGUUG--CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 23646 0.7 0.695728
Target:  5'- --gGCGCCGcaaacaucUACCUCGACG-UCGCGCu -3'
miRNA:   3'- uuaUGCGGC--------AUGGGGUUGCcGGCGCG- -5'
29981 3' -58 NC_006273.1 + 38910 0.7 0.705378
Target:  5'- --cGCGCCGUGCCgaaCCAcucgucCGcGUCGCGCg -3'
miRNA:   3'- uuaUGCGGCAUGG---GGUu-----GC-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 44441 0.7 0.705378
Target:  5'- --gGCaCCGUGCCCCGA-GGCgGCGa -3'
miRNA:   3'- uuaUGcGGCAUGGGGUUgCCGgCGCg -5'
29981 3' -58 NC_006273.1 + 23335 0.7 0.705378
Target:  5'- uGUugGCCcUAcggaucCCCCAgcgacugugucaGCGGCUGCGCa -3'
miRNA:   3'- uUAugCGGcAU------GGGGU------------UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 178361 0.7 0.705378
Target:  5'- -uUGCGCCGUcACCa-AACuGCCGUGCa -3'
miRNA:   3'- uuAUGCGGCA-UGGggUUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 43028 0.7 0.705378
Target:  5'- ----aGCCGcgacGCgCC-ACGGCCGCGCa -3'
miRNA:   3'- uuaugCGGCa---UGgGGuUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 147140 0.7 0.70634
Target:  5'- --gACGCCGagaacuuggauugcgACCCCGaagugAUGGCCGUGUa -3'
miRNA:   3'- uuaUGCGGCa--------------UGGGGU-----UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 99329 0.7 0.712099
Target:  5'- cGGUGCGUCGU-CCUCAucuccgcucggaacGCGGCC-CGCg -3'
miRNA:   3'- -UUAUGCGGCAuGGGGU--------------UGCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 91440 0.7 0.71497
Target:  5'- ----aGCCGcggGCCCCAcCGGCgcuaGCGCg -3'
miRNA:   3'- uuaugCGGCa--UGGGGUuGCCGg---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.