miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 96147 0.66 0.913561
Target:  5'- --cGC-CCGUGCUCCGAgGaGCaGCGCg -3'
miRNA:   3'- uuaUGcGGCAUGGGGUUgC-CGgCGCG- -5'
29981 3' -58 NC_006273.1 + 42194 0.66 0.913561
Target:  5'- ---uCGUCGUAauagCCGACGGCCGC-Cg -3'
miRNA:   3'- uuauGCGGCAUgg--GGUUGCCGGCGcG- -5'
29981 3' -58 NC_006273.1 + 68239 0.66 0.913561
Target:  5'- ---cCGCCG-ACuUCCAGCGGCC-CGUc -3'
miRNA:   3'- uuauGCGGCaUG-GGGUUGCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 42833 0.66 0.913561
Target:  5'- --aACGCCGuuccgUugCCCAACGGUCacaCGUc -3'
miRNA:   3'- uuaUGCGGC-----AugGGGUUGCCGGc--GCG- -5'
29981 3' -58 NC_006273.1 + 157037 0.66 0.913561
Target:  5'- --gGCGCgGaaACCaCCGuCGGCCGUGUg -3'
miRNA:   3'- uuaUGCGgCa-UGG-GGUuGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 18504 0.66 0.913561
Target:  5'- --cAUGCUGgGCUCCAucgAgGGCCuGCGCg -3'
miRNA:   3'- uuaUGCGGCaUGGGGU---UgCCGG-CGCG- -5'
29981 3' -58 NC_006273.1 + 15420 0.66 0.913561
Target:  5'- --gACGCCGcgUugCCCGAUGaGCgacgcgaGCGCg -3'
miRNA:   3'- uuaUGCGGC--AugGGGUUGC-CGg------CGCG- -5'
29981 3' -58 NC_006273.1 + 94666 0.66 0.913561
Target:  5'- --aGCGCCG-GCCCCG-CcGCCGC-Ca -3'
miRNA:   3'- uuaUGCGGCaUGGGGUuGcCGGCGcG- -5'
29981 3' -58 NC_006273.1 + 111874 0.66 0.912994
Target:  5'- --cACGCCGcugcugaaacggcUACCgcuaCGACGuaaaGCCGCGCa -3'
miRNA:   3'- uuaUGCGGC-------------AUGGg---GUUGC----CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 141004 0.66 0.912994
Target:  5'- --cGCGCCcgGUGCCCgGcccACGGCCccggaugGUGCu -3'
miRNA:   3'- uuaUGCGG--CAUGGGgU---UGCCGG-------CGCG- -5'
29981 3' -58 NC_006273.1 + 165685 0.66 0.912994
Target:  5'- ---uCGCCGcUGCCUacgcgauCGGCGGCCGUcaGCu -3'
miRNA:   3'- uuauGCGGC-AUGGG-------GUUGCCGGCG--CG- -5'
29981 3' -58 NC_006273.1 + 22283 0.66 0.911854
Target:  5'- cGGUGCGCUcaucugcggcagcgGUACCCgAcGCGGCagcgGCGCc -3'
miRNA:   3'- -UUAUGCGG--------------CAUGGGgU-UGCCGg---CGCG- -5'
29981 3' -58 NC_006273.1 + 172184 0.66 0.910128
Target:  5'- --gACGCCGUcaagcggaggcaaagGCgaggCCgCGcCGGCCGCGCc -3'
miRNA:   3'- uuaUGCGGCA---------------UG----GG-GUuGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 202217 0.66 0.908382
Target:  5'- uGUACGCCGUuuucgGCCUcacgaggucggagguCAcgccacaugaagccGCGGCgGCGCg -3'
miRNA:   3'- uUAUGCGGCA-----UGGG---------------GU--------------UGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 144110 0.66 0.907796
Target:  5'- cGUACGCCuGUGCUuuguuaCGACGGCgGgGUg -3'
miRNA:   3'- uUAUGCGG-CAUGGg-----GUUGCCGgCgCG- -5'
29981 3' -58 NC_006273.1 + 194141 0.66 0.907796
Target:  5'- --gAgGCCGUcgACUCC-ACGcGCCGCGg -3'
miRNA:   3'- uuaUgCGGCA--UGGGGuUGC-CGGCGCg -5'
29981 3' -58 NC_006273.1 + 70086 0.66 0.907796
Target:  5'- --gACGCUGUugaGCUCgGACacagcGCCGCGCu -3'
miRNA:   3'- uuaUGCGGCA---UGGGgUUGc----CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 135410 0.66 0.907796
Target:  5'- ---uCGCaCGcACCUgugugaucugggCAGCGGCUGCGCg -3'
miRNA:   3'- uuauGCG-GCaUGGG------------GUUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 117549 0.66 0.907796
Target:  5'- --aGCGCCcgucauGUAUCCCGGCG-CCGUaGCg -3'
miRNA:   3'- uuaUGCGG------CAUGGGGUUGCcGGCG-CG- -5'
29981 3' -58 NC_006273.1 + 159501 0.66 0.907796
Target:  5'- cGUGCG-CGUcUCCCAAUGGCUagGCGUu -3'
miRNA:   3'- uUAUGCgGCAuGGGGUUGCCGG--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.