miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 275 0.66 0.919107
Target:  5'- --gACGCggguugugcagUGUGCCCCGG-GGCC-CGCg -3'
miRNA:   3'- uuaUGCG-----------GCAUGGGGUUgCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 606 0.66 0.919107
Target:  5'- --cGCGCuCGgggACCCaguccGCGGCCcuguuGCGCg -3'
miRNA:   3'- uuaUGCG-GCa--UGGGgu---UGCCGG-----CGCG- -5'
29981 3' -58 NC_006273.1 + 913 0.73 0.549261
Target:  5'- --cGCGCCccccGCCCCucggucGCGGCCGCGg -3'
miRNA:   3'- uuaUGCGGca--UGGGGu-----UGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 1208 0.66 0.891796
Target:  5'- --gGCGCCGUGuggcgcgcggcguuuCUggCCAACagcacgGGCCGCGCc -3'
miRNA:   3'- uuaUGCGGCAU---------------GG--GGUUG------CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 1285 0.66 0.919107
Target:  5'- --cACGCUGcUGCCgCUcgGACGGCCGUa- -3'
miRNA:   3'- uuaUGCGGC-AUGG-GG--UUGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 1558 0.72 0.597795
Target:  5'- --cACGCUG-AUCCUAGCGGC-GCGCg -3'
miRNA:   3'- uuaUGCGGCaUGGGGUUGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 1617 0.66 0.901813
Target:  5'- uGGUGCgGCUGUACCgcugCAAcCGGCUGgGCg -3'
miRNA:   3'- -UUAUG-CGGCAUGGg---GUU-GCCGGCgCG- -5'
29981 3' -58 NC_006273.1 + 1855 0.83 0.151819
Target:  5'- --gGCGCCGcACCCCGcgucgcugcugACGGCCGUGCg -3'
miRNA:   3'- uuaUGCGGCaUGGGGU-----------UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 2406 0.73 0.549261
Target:  5'- --gGCGCCc-GCCgCCGA-GGCCGCGCg -3'
miRNA:   3'- uuaUGCGGcaUGG-GGUUgCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 2444 0.66 0.889207
Target:  5'- ----aGCUGgACCgCGagcagugggaGCGGCCGCGCu -3'
miRNA:   3'- uuaugCGGCaUGGgGU----------UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 2481 0.69 0.77087
Target:  5'- --cGCGCUGcaccUGCaCCC-GCGcGCCGCGCu -3'
miRNA:   3'- uuaUGCGGC----AUG-GGGuUGC-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 4897 0.67 0.86152
Target:  5'- --aGCGCCG-ACCgaCCAGcCGGCCGauuCGCc -3'
miRNA:   3'- uuaUGCGGCaUGG--GGUU-GCCGGC---GCG- -5'
29981 3' -58 NC_006273.1 + 6364 1.1 0.002683
Target:  5'- gAAUACGCCGUACCCCAACGGCCGCGCa -3'
miRNA:   3'- -UUAUGCGGCAUGGGGUUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 8344 0.66 0.895616
Target:  5'- ---cCGCCGUGCCgCCGGuuggUGGCUG-GCg -3'
miRNA:   3'- uuauGCGGCAUGG-GGUU----GCCGGCgCG- -5'
29981 3' -58 NC_006273.1 + 13585 0.71 0.666517
Target:  5'- ---cCGCCGggcgGCCCgGGCcGCCGUGCu -3'
miRNA:   3'- uuauGCGGCa---UGGGgUUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 14279 0.66 0.907796
Target:  5'- --gACGCCgGUugUCCGGCugagaguGUCGCGCa -3'
miRNA:   3'- uuaUGCGG-CAugGGGUUGc------CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 14864 0.68 0.838735
Target:  5'- --cGCGaCGaUACCCUAAgGGCgCGCGUa -3'
miRNA:   3'- uuaUGCgGC-AUGGGGUUgCCG-GCGCG- -5'
29981 3' -58 NC_006273.1 + 15205 0.66 0.898121
Target:  5'- uGUACGCCauccagauggacgACCCCAaccacuACGuGCgGCGCg -3'
miRNA:   3'- uUAUGCGGca-----------UGGGGU------UGC-CGgCGCG- -5'
29981 3' -58 NC_006273.1 + 15420 0.66 0.913561
Target:  5'- --gACGCCGcgUugCCCGAUGaGCgacgcgaGCGCg -3'
miRNA:   3'- uuaUGCGGC--AugGGGUUGC-CGg------CGCG- -5'
29981 3' -58 NC_006273.1 + 17180 0.67 0.875765
Target:  5'- --cAUGCCGgucguCCgCCGuCGGCCGcCGCc -3'
miRNA:   3'- uuaUGCGGCau---GG-GGUuGCCGGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.