miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 18348 0.68 0.805963
Target:  5'- --aACGCCGUucGCCaCCAcCGaaCCGCGCu -3'
miRNA:   3'- uuaUGCGGCA--UGG-GGUuGCc-GGCGCG- -5'
29981 3' -58 NC_006273.1 + 18396 0.69 0.77087
Target:  5'- -cUGCaCCG-ACCCCAcugacgcuGCGGCCGUGg -3'
miRNA:   3'- uuAUGcGGCaUGGGGU--------UGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 18504 0.66 0.913561
Target:  5'- --cAUGCUGgGCUCCAucgAgGGCCuGCGCg -3'
miRNA:   3'- uuaUGCGGCaUGGGGU---UgCCGG-CGCG- -5'
29981 3' -58 NC_006273.1 + 19983 0.73 0.530174
Target:  5'- --cACGCCGUaucACCCgAACuGCCGuCGCg -3'
miRNA:   3'- uuaUGCGGCA---UGGGgUUGcCGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 20511 0.67 0.875765
Target:  5'- --aACGUCGUgaGCCa-GACGGCCaCGCg -3'
miRNA:   3'- uuaUGCGGCA--UGGggUUGCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 21319 0.66 0.901813
Target:  5'- --cGCGcCCGUuuUCaCAGCaGCCGCGCu -3'
miRNA:   3'- uuaUGC-GGCAugGG-GUUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 22283 0.66 0.911854
Target:  5'- cGGUGCGCUcaucugcggcagcgGUACCCgAcGCGGCagcgGCGCc -3'
miRNA:   3'- -UUAUGCGG--------------CAUGGGgU-UGCCGg---CGCG- -5'
29981 3' -58 NC_006273.1 + 23335 0.7 0.705378
Target:  5'- uGUugGCCcUAcggaucCCCCAgcgacugugucaGCGGCUGCGCa -3'
miRNA:   3'- uUAugCGGcAU------GGGGU------------UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 23513 0.68 0.814393
Target:  5'- --cACGCCGUugCCaCGagcAUGGaucaCGCGCu -3'
miRNA:   3'- uuaUGCGGCAugGG-GU---UGCCg---GCGCG- -5'
29981 3' -58 NC_006273.1 + 23646 0.7 0.695728
Target:  5'- --gGCGCCGcaaacaucUACCUCGACG-UCGCGCu -3'
miRNA:   3'- uuaUGCGGC--------AUGGGGUUGCcGGCGCG- -5'
29981 3' -58 NC_006273.1 + 24192 0.67 0.882588
Target:  5'- ---uCGUCGUuucCCCCAcCcGCCGCGCc -3'
miRNA:   3'- uuauGCGGCAu--GGGGUuGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 28504 0.69 0.752607
Target:  5'- --gACGCUGUAaucaCCCAugaccaugaguCGGCCGCGa -3'
miRNA:   3'- uuaUGCGGCAUg---GGGUu----------GCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 28808 0.71 0.637073
Target:  5'- -cUACGCCGggGCCCUA--GGCCGCa- -3'
miRNA:   3'- uuAUGCGGCa-UGGGGUugCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 30663 0.69 0.77087
Target:  5'- --cGCGCCGggcgGCuUCCuGCGGCCGgcCGCg -3'
miRNA:   3'- uuaUGCGGCa---UG-GGGuUGCCGGC--GCG- -5'
29981 3' -58 NC_006273.1 + 31248 0.67 0.867312
Target:  5'- cGGUACGCCGgguaGCCgCgcaggucaacaaccaGagccguucggggcguGCGGCCGCGCu -3'
miRNA:   3'- -UUAUGCGGCa---UGGgG---------------U---------------UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 32668 0.67 0.875765
Target:  5'- --cGCGUCGcagGCCCgAGCGGuuGcCGUg -3'
miRNA:   3'- uuaUGCGGCa--UGGGgUUGCCggC-GCG- -5'
29981 3' -58 NC_006273.1 + 33330 0.66 0.889207
Target:  5'- --aGCGCCGagcugaACUgCGGCaGCCGCGUg -3'
miRNA:   3'- uuaUGCGGCa-----UGGgGUUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 34121 0.66 0.919107
Target:  5'- ---uCGCCGcACUCgCAAaaGGCCGCGUa -3'
miRNA:   3'- uuauGCGGCaUGGG-GUUg-CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 34474 0.66 0.913561
Target:  5'- -cUGCGCCucGUGCaCCaGACGGCggaaaGCGCc -3'
miRNA:   3'- uuAUGCGG--CAUG-GGgUUGCCGg----CGCG- -5'
29981 3' -58 NC_006273.1 + 34691 0.67 0.844197
Target:  5'- --gGCGCCGgcguuuuccuuuucUgACCgCCGGCGGCCGC-Ca -3'
miRNA:   3'- uuaUGCGGC--------------A-UGG-GGUUGCCGGCGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.