miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 35889 0.68 0.838735
Target:  5'- --gAUGCCGUGCagCGGCGGCCaGCa- -3'
miRNA:   3'- uuaUGCGGCAUGggGUUGCCGG-CGcg -5'
29981 3' -58 NC_006273.1 + 36354 0.7 0.724498
Target:  5'- --cGCGCaCGaaGCCCCugaGGUCGCGCg -3'
miRNA:   3'- uuaUGCG-GCa-UGGGGuugCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 36481 0.66 0.888554
Target:  5'- --gGCuGgCGUGCUguuuuccguguugCCGACGGCgGCGCg -3'
miRNA:   3'- uuaUG-CgGCAUGG-------------GGUUGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 36551 0.71 0.6469
Target:  5'- --gAgGCCGagaGCCCCAgaucGCGcGCCGUGCg -3'
miRNA:   3'- uuaUgCGGCa--UGGGGU----UGC-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 36780 0.68 0.838735
Target:  5'- --cACGCCGaGgCCCAGUGGCgGCaGCa -3'
miRNA:   3'- uuaUGCGGCaUgGGGUUGCCGgCG-CG- -5'
29981 3' -58 NC_006273.1 + 37223 0.7 0.728288
Target:  5'- --gACGCgCGUGCCCaggcagaggaaggcgCGACGGCgGCGa -3'
miRNA:   3'- uuaUGCG-GCAUGGG---------------GUUGCCGgCGCg -5'
29981 3' -58 NC_006273.1 + 37276 0.69 0.765436
Target:  5'- --gACGCCGUggccgccgagcaGCCCUugcGACGGCCGgacaugccggcagucCGCg -3'
miRNA:   3'- uuaUGCGGCA------------UGGGG---UUGCCGGC---------------GCG- -5'
29981 3' -58 NC_006273.1 + 38107 0.74 0.502019
Target:  5'- --gGCGCCGacucgcGCCCCAGCG-CCaGCGCg -3'
miRNA:   3'- uuaUGCGGCa-----UGGGGUUGCcGG-CGCG- -5'
29981 3' -58 NC_006273.1 + 38188 0.74 0.502019
Target:  5'- --gACGCCGaGCCCgCGccGCGGCCGCu- -3'
miRNA:   3'- uuaUGCGGCaUGGG-GU--UGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 38342 0.7 0.742391
Target:  5'- ---cCGCCGUcgcguccGCCCCGACcaCCGCGUg -3'
miRNA:   3'- uuauGCGGCA-------UGGGGUUGccGGCGCG- -5'
29981 3' -58 NC_006273.1 + 38404 0.68 0.830785
Target:  5'- ---cCGCCGgcGCCuCCGuACGGCUGCGg -3'
miRNA:   3'- uuauGCGGCa-UGG-GGU-UGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 38524 0.7 0.724498
Target:  5'- --gACGUCGU-CCCCGucgcCGGCCccgccGCGCa -3'
miRNA:   3'- uuaUGCGGCAuGGGGUu---GCCGG-----CGCG- -5'
29981 3' -58 NC_006273.1 + 38791 0.72 0.617413
Target:  5'- --aGCGCCGUcGCCUCcuCGGC-GCGCa -3'
miRNA:   3'- uuaUGCGGCA-UGGGGuuGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 38910 0.7 0.705378
Target:  5'- --cGCGCCGUGCCgaaCCAcucgucCGcGUCGCGCg -3'
miRNA:   3'- uuaUGCGGCAUGG---GGUu-----GC-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 39136 0.71 0.637073
Target:  5'- -uUACGCCGUGCCUuucaCGACGccgggaaaGCCGgGCu -3'
miRNA:   3'- uuAUGCGGCAUGGG----GUUGC--------CGGCgCG- -5'
29981 3' -58 NC_006273.1 + 39405 0.66 0.901813
Target:  5'- ---uUGCCGcUACucggaggggcgCCCGGCGGCC-CGCg -3'
miRNA:   3'- uuauGCGGC-AUG-----------GGGUUGCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 39455 0.75 0.456641
Target:  5'- --gACGCCGUGgCCCGGCGucGCCguagGCGCa -3'
miRNA:   3'- uuaUGCGGCAUgGGGUUGC--CGG----CGCG- -5'
29981 3' -58 NC_006273.1 + 39562 0.69 0.761791
Target:  5'- --aAgGCCcuccgGCCCC-GCGGCCGCGa -3'
miRNA:   3'- uuaUgCGGca---UGGGGuUGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 41849 0.67 0.86152
Target:  5'- --aACGCCGUGCaCCacaAACucuGCgGCGCg -3'
miRNA:   3'- uuaUGCGGCAUG-GGg--UUGc--CGgCGCG- -5'
29981 3' -58 NC_006273.1 + 42165 0.69 0.779834
Target:  5'- --aACGCCGccGCCgCCAGCGGuaGCuGCu -3'
miRNA:   3'- uuaUGCGGCa-UGG-GGUUGCCggCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.