miRNA display CGI


Results 61 - 80 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 42194 0.66 0.913561
Target:  5'- ---uCGUCGUAauagCCGACGGCCGC-Cg -3'
miRNA:   3'- uuauGCGGCAUgg--GGUUGCCGGCGcG- -5'
29981 3' -58 NC_006273.1 + 42315 0.69 0.788677
Target:  5'- ----aGCCGU---CCAGCGGCUGCGUg -3'
miRNA:   3'- uuaugCGGCAuggGGUUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 42833 0.66 0.913561
Target:  5'- --aACGCCGuuccgUugCCCAACGGUCacaCGUc -3'
miRNA:   3'- uuaUGCGGC-----AugGGGUUGCCGGc--GCG- -5'
29981 3' -58 NC_006273.1 + 43028 0.7 0.705378
Target:  5'- ----aGCCGcgacGCgCC-ACGGCCGCGCa -3'
miRNA:   3'- uuaugCGGCa---UGgGGuUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 43326 0.67 0.854109
Target:  5'- --aGCGUCGUcGCCCCGgacuGCGcCCGCGg -3'
miRNA:   3'- uuaUGCGGCA-UGGGGU----UGCcGGCGCg -5'
29981 3' -58 NC_006273.1 + 44441 0.7 0.705378
Target:  5'- --gGCaCCGUGCCCCGA-GGCgGCGa -3'
miRNA:   3'- uuaUGcGGCAUGGGGUUgCCGgCGCg -5'
29981 3' -58 NC_006273.1 + 45246 0.71 0.637073
Target:  5'- -uUGC-CCGUGCcgCCCGGCGGCUGCucGCg -3'
miRNA:   3'- uuAUGcGGCAUG--GGGUUGCCGGCG--CG- -5'
29981 3' -58 NC_006273.1 + 45586 0.66 0.913561
Target:  5'- --aGCuGCCGUGCaggcggCC-AUGGCCGCGg -3'
miRNA:   3'- uuaUG-CGGCAUGg-----GGuUGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 46336 0.67 0.882588
Target:  5'- -cUACGCCGccgguccggGCCCCcaccacGCGGCUGuCGUc -3'
miRNA:   3'- uuAUGCGGCa--------UGGGGu-----UGCCGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 46388 0.68 0.822669
Target:  5'- --gACGCCGaUACCC--GC-GCCGCGUa -3'
miRNA:   3'- uuaUGCGGC-AUGGGguUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 46904 0.7 0.724498
Target:  5'- gGGUGCGCgCGUcUCCCGA-GGCCgagGCGCg -3'
miRNA:   3'- -UUAUGCG-GCAuGGGGUUgCCGG---CGCG- -5'
29981 3' -58 NC_006273.1 + 48196 0.67 0.86152
Target:  5'- --cAC-CCGcACCCCGAgGGCCG-GCc -3'
miRNA:   3'- uuaUGcGGCaUGGGGUUgCCGGCgCG- -5'
29981 3' -58 NC_006273.1 + 48642 0.67 0.846512
Target:  5'- --aACGCCGUcggcGCaCgCAGCGGUCGCa- -3'
miRNA:   3'- uuaUGCGGCA----UG-GgGUUGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 49905 0.68 0.814393
Target:  5'- --cACGaaGgGCCCCAGgGcGCUGCGCg -3'
miRNA:   3'- uuaUGCggCaUGGGGUUgC-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 49968 0.69 0.788677
Target:  5'- -cUGCGCgGUGCUgguccaCCAcguCGGCCGCGa -3'
miRNA:   3'- uuAUGCGgCAUGG------GGUu--GCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 52304 0.66 0.889207
Target:  5'- --aGCGCCaccUugCCCAACG-CCGaCGCc -3'
miRNA:   3'- uuaUGCGGc--AugGGGUUGCcGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 53022 0.69 0.788677
Target:  5'- uGUACcCCuUGCCCCAACGGCaCGUa- -3'
miRNA:   3'- uUAUGcGGcAUGGGGUUGCCG-GCGcg -5'
29981 3' -58 NC_006273.1 + 55388 0.67 0.882588
Target:  5'- --gGCGCUGcugcgACUCCAccggcACGGCC-CGCa -3'
miRNA:   3'- uuaUGCGGCa----UGGGGU-----UGCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 56407 0.69 0.751683
Target:  5'- --cGCGCCGUGCgcacguuCCCAggcacGCGGCCcaCGCu -3'
miRNA:   3'- uuaUGCGGCAUG-------GGGU-----UGCCGGc-GCG- -5'
29981 3' -58 NC_006273.1 + 56525 0.67 0.882588
Target:  5'- --aAUGCCG-GCCCCG-CGGgguccccuUCGCGCa -3'
miRNA:   3'- uuaUGCGGCaUGGGGUuGCC--------GGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.