miRNA display CGI


Results 81 - 100 of 334 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 57477 0.67 0.846512
Target:  5'- uGUGCGCCGUGgugcugggucagUgCCAGCGGgaaaCCGCGg -3'
miRNA:   3'- uUAUGCGGCAU------------GgGGUUGCC----GGCGCg -5'
29981 3' -58 NC_006273.1 + 57826 0.66 0.889207
Target:  5'- --aACGCUGcgaagACgCCCGGCGucuaauaauacaGCCGCGCc -3'
miRNA:   3'- uuaUGCGGCa----UG-GGGUUGC------------CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 59581 0.67 0.854109
Target:  5'- aGAUGCGCgaGUGCCUacuguucucgaUAGCGGCCGUcaacGCc -3'
miRNA:   3'- -UUAUGCGg-CAUGGG-----------GUUGCCGGCG----CG- -5'
29981 3' -58 NC_006273.1 + 60050 0.7 0.69476
Target:  5'- uGUACGCCGcaaaagcgaaacuUGCCCCAGuaGCCGUGa -3'
miRNA:   3'- uUAUGCGGC-------------AUGGGGUUgcCGGCGCg -5'
29981 3' -58 NC_006273.1 + 63168 0.67 0.882588
Target:  5'- -uUGCGuCCGU-CUCgCGgcGCGGCCgGCGCg -3'
miRNA:   3'- uuAUGC-GGCAuGGG-GU--UGCCGG-CGCG- -5'
29981 3' -58 NC_006273.1 + 64312 0.68 0.797389
Target:  5'- --gGCGCCcUgggaaucggcGCCCCAACcGCCGCGa -3'
miRNA:   3'- uuaUGCGGcA----------UGGGGUUGcCGGCGCg -5'
29981 3' -58 NC_006273.1 + 64749 0.66 0.913561
Target:  5'- cAUGCuGCC-UAUCUacgaGACGGCCGCGa -3'
miRNA:   3'- uUAUG-CGGcAUGGGg---UUGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 65183 0.66 0.895616
Target:  5'- --gGCGaCCGUACCagaggcugaGAUcGCCGCGCg -3'
miRNA:   3'- uuaUGC-GGCAUGGgg-------UUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 65419 0.67 0.86152
Target:  5'- --aACGCCGcaaggACCUCAGCGGuaGCa- -3'
miRNA:   3'- uuaUGCGGCa----UGGGGUUGCCggCGcg -5'
29981 3' -58 NC_006273.1 + 65797 0.67 0.868741
Target:  5'- --aGCGCuCGUgucugcgucGCCCCuGCGGUC-CGCa -3'
miRNA:   3'- uuaUGCG-GCA---------UGGGGuUGCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 66757 0.68 0.830785
Target:  5'- --gACGCUGgugcgcgACCCgGGCaGCCGCGg -3'
miRNA:   3'- uuaUGCGGCa------UGGGgUUGcCGGCGCg -5'
29981 3' -58 NC_006273.1 + 67726 0.74 0.483617
Target:  5'- --gGCgGCCG-ACCCCGccguuGCGGCCGcCGCu -3'
miRNA:   3'- uuaUG-CGGCaUGGGGU-----UGCCGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 68196 0.79 0.262486
Target:  5'- -uUACGCCG-GCCUCcGCGGCCGCuGCg -3'
miRNA:   3'- uuAUGCGGCaUGGGGuUGCCGGCG-CG- -5'
29981 3' -58 NC_006273.1 + 68223 0.72 0.627241
Target:  5'- ---cCGCCGUgGCCaCCAACGGCgGCa- -3'
miRNA:   3'- uuauGCGGCA-UGG-GGUUGCCGgCGcg -5'
29981 3' -58 NC_006273.1 + 68239 0.66 0.913561
Target:  5'- ---cCGCCG-ACuUCCAGCGGCC-CGUc -3'
miRNA:   3'- uuauGCGGCaUG-GGGUUGCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 68335 0.71 0.6469
Target:  5'- cAUGCgGCUGcacgACUCC-ACGGCCGUGCa -3'
miRNA:   3'- uUAUG-CGGCa---UGGGGuUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 68520 0.69 0.788677
Target:  5'- ---cUGCCGUACCUguCGGCGGa-GCGCa -3'
miRNA:   3'- uuauGCGGCAUGGG--GUUGCCggCGCG- -5'
29981 3' -58 NC_006273.1 + 69421 0.69 0.77087
Target:  5'- cGAUG-GCCG-ACCCCuggcAUGGCgGCGCc -3'
miRNA:   3'- -UUAUgCGGCaUGGGGu---UGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 69989 0.7 0.724498
Target:  5'- -uUACGCCGgagGCCgCCAACu-CCGUGCu -3'
miRNA:   3'- uuAUGCGGCa--UGG-GGUUGccGGCGCG- -5'
29981 3' -58 NC_006273.1 + 70086 0.66 0.907796
Target:  5'- --gACGCUGUugaGCUCgGACacagcGCCGCGCu -3'
miRNA:   3'- uuaUGCGGCA---UGGGgUUGc----CGGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.