miRNA display CGI


Results 1 - 20 of 334 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 235106 0.66 0.919107
Target:  5'- --gACGCggguugugcagUGUGCCCCGG-GGCC-CGCg -3'
miRNA:   3'- uuaUGCG-----------GCAUGGGGUUgCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 234772 0.67 0.854109
Target:  5'- --aGCGCCGUggacagcaaGCCgCAgaaGCGGCggaGCGCu -3'
miRNA:   3'- uuaUGCGGCA---------UGGgGU---UGCCGg--CGCG- -5'
29981 3' -58 NC_006273.1 + 234504 0.66 0.889207
Target:  5'- --cAUGCCGUugCgCugggccAUGGCCGCGg -3'
miRNA:   3'- uuaUGCGGCAugGgGu-----UGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 234457 0.73 0.539689
Target:  5'- --aACGCCGUcgccGCCCCGAaaagcgaaGcGCUGCGCa -3'
miRNA:   3'- uuaUGCGGCA----UGGGGUUg-------C-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 234455 0.69 0.761791
Target:  5'- --aAgGCCcuccgGCCCC-GCGGCCGCGa -3'
miRNA:   3'- uuaUgCGGca---UGGGGuUGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 234348 0.75 0.456641
Target:  5'- --gACGCCGUGgCCCGGCGucGCCguagGCGCa -3'
miRNA:   3'- uuaUGCGGCAUgGGGUUGC--CGG----CGCG- -5'
29981 3' -58 NC_006273.1 + 234298 0.66 0.901813
Target:  5'- ---uUGCCGcUACucggaggggcgCCCGGCGGCC-CGCg -3'
miRNA:   3'- uuauGCGGC-AUG-----------GGGUUGCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 233802 0.7 0.743324
Target:  5'- --cGCGCCGUGCCgaaaCCAcucgucCGcGUCGCGCg -3'
miRNA:   3'- uuaUGCGGCAUGG----GGUu-----GC-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 233683 0.72 0.617413
Target:  5'- --aGCGCCGUcGCCUCcuCGGC-GCGCa -3'
miRNA:   3'- uuaUGCGGCA-UGGGGuuGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 233661 0.68 0.803406
Target:  5'- -uUGCGCUGUcgGCCCagucgccaccgccgCGGCGGauuuCCGCGCg -3'
miRNA:   3'- uuAUGCGGCA--UGGG--------------GUUGCC----GGCGCG- -5'
29981 3' -58 NC_006273.1 + 233417 0.7 0.724498
Target:  5'- --gACGUCGU-CCCCGucgcCGGCCccgccGCGCa -3'
miRNA:   3'- uuaUGCGGCAuGGGGUu---GCCGG-----CGCG- -5'
29981 3' -58 NC_006273.1 + 233297 0.68 0.830785
Target:  5'- ---cCGCCGgcGCCuCCGuACGGCUGCGg -3'
miRNA:   3'- uuauGCGGCa-UGG-GGU-UGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 233235 0.7 0.742391
Target:  5'- ---cCGCCGUcgcguccGCCCCGACcaCCGCGUg -3'
miRNA:   3'- uuauGCGGCA-------UGGGGUUGccGGCGCG- -5'
29981 3' -58 NC_006273.1 + 233000 0.74 0.502019
Target:  5'- --gGCGCCGacucgcGCCCCAGCG-CCaGCGCg -3'
miRNA:   3'- uuaUGCGGCa-----UGGGGUUGCcGG-CGCG- -5'
29981 3' -58 NC_006273.1 + 232870 0.66 0.889207
Target:  5'- ----aGCUaacUGCCCguGCGGCuCGCGCg -3'
miRNA:   3'- uuaugCGGc--AUGGGguUGCCG-GCGCG- -5'
29981 3' -58 NC_006273.1 + 227126 0.69 0.761791
Target:  5'- uAUGCGCCGcUGCCCUAcCGGCUcuCGUc -3'
miRNA:   3'- uUAUGCGGC-AUGGGGUuGCCGGc-GCG- -5'
29981 3' -58 NC_006273.1 + 221553 0.67 0.882588
Target:  5'- gAAUGCGuCCGUcggUCCCGACGuCCGuCGCc -3'
miRNA:   3'- -UUAUGC-GGCAu--GGGGUUGCcGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 221033 0.67 0.854109
Target:  5'- --aGCGCgGggaGCUCCGGCGGCacaacugcaGCGCc -3'
miRNA:   3'- uuaUGCGgCa--UGGGGUUGCCGg--------CGCG- -5'
29981 3' -58 NC_006273.1 + 219751 0.66 0.889207
Target:  5'- --gGC-CCGUAUCguccugaugaCCAGCGGCCucGCGCu -3'
miRNA:   3'- uuaUGcGGCAUGG----------GGUUGCCGG--CGCG- -5'
29981 3' -58 NC_006273.1 + 218539 0.66 0.895616
Target:  5'- --gACGCaCGUACaCCUucaugaGGCgGCGCg -3'
miRNA:   3'- uuaUGCG-GCAUG-GGGuug---CCGgCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.