miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 218478 0.69 0.752607
Target:  5'- uGUACGCagccucCGUugCguuCCAGCcuGGCCGCGCg -3'
miRNA:   3'- uUAUGCG------GCAugG---GGUUG--CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 217554 0.68 0.822669
Target:  5'- --cGCGCUGUcgggauagguGCCCCAGgcuuCGGCgGCGg -3'
miRNA:   3'- uuaUGCGGCA----------UGGGGUU----GCCGgCGCg -5'
29981 3' -58 NC_006273.1 + 215962 0.66 0.907796
Target:  5'- cGUGCaugGCUuUugCUCGcCGGCCGCGCu -3'
miRNA:   3'- uUAUG---CGGcAugGGGUuGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 215664 0.7 0.733951
Target:  5'- ----aGCCGUggGCCCacuGCGGCCGCu- -3'
miRNA:   3'- uuaugCGGCA--UGGGgu-UGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 215428 0.71 0.656718
Target:  5'- --gAUGCUGUGaugacggcggUCUCAACGGCCGCGg -3'
miRNA:   3'- uuaUGCGGCAU----------GGGGUUGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 213458 0.71 0.6469
Target:  5'- --aGCGCCGUcuACCcgaugCCGGCGGCUGCa- -3'
miRNA:   3'- uuaUGCGGCA--UGG-----GGUUGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 212651 0.66 0.919107
Target:  5'- --aGCGguaCCGUACCUCGGCGacgcuccauGCCgGCGCc -3'
miRNA:   3'- uuaUGC---GGCAUGGGGUUGC---------CGG-CGCG- -5'
29981 3' -58 NC_006273.1 + 211516 0.68 0.822669
Target:  5'- cGUAauaGCCcaaaaaaaguuuGUGCCCCAACGGUaCGgGCu -3'
miRNA:   3'- uUAUg--CGG------------CAUGGGGUUGCCG-GCgCG- -5'
29981 3' -58 NC_006273.1 + 211295 0.68 0.822669
Target:  5'- --cGCGuuGgugGCCCCggUGG-CGCGUg -3'
miRNA:   3'- uuaUGCggCa--UGGGGuuGCCgGCGCG- -5'
29981 3' -58 NC_006273.1 + 204704 0.68 0.805963
Target:  5'- gGGUGuCGCCGgcgaGCCCCGA-GGC-GCGCc -3'
miRNA:   3'- -UUAU-GCGGCa---UGGGGUUgCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 204338 0.76 0.388945
Target:  5'- gGGUGCGCCG-ACCUUgaaAugGGUCGCGCu -3'
miRNA:   3'- -UUAUGCGGCaUGGGG---UugCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 204105 0.66 0.887243
Target:  5'- --cGCgGCCGcacGCCCCgAACGGCUcugguuguugaccuGCGCg -3'
miRNA:   3'- uuaUG-CGGCa--UGGGG-UUGCCGG--------------CGCG- -5'
29981 3' -58 NC_006273.1 + 202217 0.66 0.908382
Target:  5'- uGUACGCCGUuuucgGCCUcacgaggucggagguCAcgccacaugaagccGCGGCgGCGCg -3'
miRNA:   3'- uUAUGCGGCA-----UGGG---------------GU--------------UGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 202147 0.66 0.901203
Target:  5'- ---cCGCCGUcgucgccGCCCCGG-GGCCcucgguGCGCu -3'
miRNA:   3'- uuauGCGGCA-------UGGGGUUgCCGG------CGCG- -5'
29981 3' -58 NC_006273.1 + 201971 0.68 0.814393
Target:  5'- --cGCGCCGccgACgCCCGA-GGCgGUGCg -3'
miRNA:   3'- uuaUGCGGCa--UG-GGGUUgCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 201612 0.7 0.71879
Target:  5'- --aACGCCGUGCUggcccugcguaucauUCGGCuGCUGCGCg -3'
miRNA:   3'- uuaUGCGGCAUGG---------------GGUUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 201145 0.66 0.901813
Target:  5'- ----gGCCGcUGCCugCCGGCGGCCcuGUGCc -3'
miRNA:   3'- uuaugCGGC-AUGG--GGUUGCCGG--CGCG- -5'
29981 3' -58 NC_006273.1 + 198870 0.7 0.695728
Target:  5'- cGGUcCGCCGgu-CUCGACGGaCCGCGCc -3'
miRNA:   3'- -UUAuGCGGCaugGGGUUGCC-GGCGCG- -5'
29981 3' -58 NC_006273.1 + 197736 0.67 0.846512
Target:  5'- --cGCGCCGU-CaaCAGCGugccuuuuGCCGCGCg -3'
miRNA:   3'- uuaUGCGGCAuGggGUUGC--------CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 197374 0.69 0.77087
Target:  5'- --cGCGCUGcaccUGCaCCC-GCGcGCCGCGCu -3'
miRNA:   3'- uuaUGCGGC----AUG-GGGuUGC-CGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.