miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 197337 0.66 0.889207
Target:  5'- ----aGCUGgACCgCGagcagugggaGCGGCCGCGCu -3'
miRNA:   3'- uuaugCGGCaUGGgGU----------UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 197299 0.73 0.549261
Target:  5'- --gGCGCCc-GCCgCCGA-GGCCGCGCg -3'
miRNA:   3'- uuaUGCGGcaUGG-GGUUgCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 197251 0.68 0.814393
Target:  5'- --cGCGUCG-GCCUCGcCGGCCcgaGCGCg -3'
miRNA:   3'- uuaUGCGGCaUGGGGUuGCCGG---CGCG- -5'
29981 3' -58 NC_006273.1 + 197182 0.72 0.597795
Target:  5'- ---cCGCCGU-CUCCGgaugaGCGGCCGCGg -3'
miRNA:   3'- uuauGCGGCAuGGGGU-----UGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 196984 0.66 0.889207
Target:  5'- ---uUGCCGccACCgCAGCGGCgGCGa -3'
miRNA:   3'- uuauGCGGCa-UGGgGUUGCCGgCGCg -5'
29981 3' -58 NC_006273.1 + 196747 0.83 0.151819
Target:  5'- --gGCGCCGcACCCCGcgucgcugcugACGGCCGUGCg -3'
miRNA:   3'- uuaUGCGGCaUGGGGU-----------UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 196510 0.66 0.901813
Target:  5'- uGGUGCgGCUGUACCgcugCAAcCGGCUGgGCg -3'
miRNA:   3'- -UUAUG-CGGCAUGGg---GUU-GCCGGCgCG- -5'
29981 3' -58 NC_006273.1 + 196451 0.72 0.597795
Target:  5'- --cACGCUG-AUCCUAGCGGC-GCGCg -3'
miRNA:   3'- uuaUGCGGCaUGGGGUUGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 196178 0.66 0.919107
Target:  5'- --cACGCUGcUGCCgCUcgGACGGCCGUa- -3'
miRNA:   3'- uuaUGCGGC-AUGG-GG--UUGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 196101 0.66 0.891796
Target:  5'- --gGCGCCGUGuggcgcgcggcguuuCUggCCAACagcacgGGCCGCGCc -3'
miRNA:   3'- uuaUGCGGCAU---------------GG--GGUUG------CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 195805 0.73 0.549261
Target:  5'- --cGCGCCccccGCCCCucggucGCGGCCGCGg -3'
miRNA:   3'- uuaUGCGGca--UGGGGu-----UGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 195607 0.67 0.875765
Target:  5'- --gAUGCaCG-GCCCCAA-GGCgGCGCc -3'
miRNA:   3'- uuaUGCG-GCaUGGGGUUgCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 195499 0.66 0.919107
Target:  5'- --cGCGCuCGgggACCCaguccGCGGCCcuguuGCGCg -3'
miRNA:   3'- uuaUGCG-GCa--UGGGgu---UGCCGG-----CGCG- -5'
29981 3' -58 NC_006273.1 + 195395 0.67 0.875765
Target:  5'- --aACGUgGuUGCUCCGGCGG-CGUGCa -3'
miRNA:   3'- uuaUGCGgC-AUGGGGUUGCCgGCGCG- -5'
29981 3' -58 NC_006273.1 + 195168 0.66 0.919107
Target:  5'- --gACGCggguugugcagUGUGCCCCGG-GGCC-CGCg -3'
miRNA:   3'- uuaUGCG-----------GCAUGGGGUUgCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 194834 0.67 0.854109
Target:  5'- --aGCGCCGUggacagcaaGCCgCAgaaGCGGCggaGCGCu -3'
miRNA:   3'- uuaUGCGGCA---------UGGgGU---UGCCGg--CGCG- -5'
29981 3' -58 NC_006273.1 + 194519 0.73 0.539689
Target:  5'- --aACGCCGUcgccGCCCCGAaaagcgaaGcGCUGCGCa -3'
miRNA:   3'- uuaUGCGGCA----UGGGGUUg-------C-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 194141 0.66 0.907796
Target:  5'- --gAgGCCGUcgACUCC-ACGcGCCGCGg -3'
miRNA:   3'- uuaUgCGGCA--UGGGGuUGC-CGGCGCg -5'
29981 3' -58 NC_006273.1 + 193997 0.8 0.253027
Target:  5'- --gGCGCCGUugcccggggauaugaACCCCGccaACuGGCCGCGCg -3'
miRNA:   3'- uuaUGCGGCA---------------UGGGGU---UG-CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 190598 0.78 0.314118
Target:  5'- ---cCGCCG-GCgCCCAuCGGCCGCGCg -3'
miRNA:   3'- uuauGCGGCaUG-GGGUuGCCGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.