miRNA display CGI


Results 61 - 80 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 189018 0.66 0.907796
Target:  5'- --gGCGUCGgggGCCUgugCGACGacaGCCGCGUg -3'
miRNA:   3'- uuaUGCGGCa--UGGG---GUUGC---CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 188495 0.73 0.520721
Target:  5'- --gACGCgCGcaGCCCCAGCGcGUCGCGUa -3'
miRNA:   3'- uuaUGCG-GCa-UGGGGUUGC-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 188114 0.69 0.752607
Target:  5'- --cGCuGCCGUaguacaugGCCCCGuucaACGGCCG-GCg -3'
miRNA:   3'- uuaUG-CGGCA--------UGGGGU----UGCCGGCgCG- -5'
29981 3' -58 NC_006273.1 + 187297 0.67 0.868741
Target:  5'- --gGCGUCGUugCCgGgGCGGCUGCu- -3'
miRNA:   3'- uuaUGCGGCAugGGgU-UGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 180053 0.71 0.67629
Target:  5'- --gGCGCCGUcuucggcgugcAUCCCGauacGCGGCagGCGCa -3'
miRNA:   3'- uuaUGCGGCA-----------UGGGGU----UGCCGg-CGCG- -5'
29981 3' -58 NC_006273.1 + 178361 0.7 0.705378
Target:  5'- -uUGCGCCGUcACCa-AACuGCCGUGCa -3'
miRNA:   3'- uuAUGCGGCA-UGGggUUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 178181 0.69 0.77087
Target:  5'- --aGCGCCcUGCCCU-ACGGgcaCCGUGCa -3'
miRNA:   3'- uuaUGCGGcAUGGGGuUGCC---GGCGCG- -5'
29981 3' -58 NC_006273.1 + 176445 0.68 0.822669
Target:  5'- ---uUGCUGUGCgcgCUCAAgGGCCGUGCc -3'
miRNA:   3'- uuauGCGGCAUG---GGGUUgCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 176383 0.67 0.882588
Target:  5'- --cGCGCugcgagcaauCGUGCCCCAAggUGGUCGUGa -3'
miRNA:   3'- uuaUGCG----------GCAUGGGGUU--GCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 175780 0.66 0.907796
Target:  5'- ---uCGCCGUgGCgUUGACGGCCGCu- -3'
miRNA:   3'- uuauGCGGCA-UGgGGUUGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 175145 0.71 0.666517
Target:  5'- ---cCGCCGUGCCCagucGCGGUggaCGCGUg -3'
miRNA:   3'- uuauGCGGCAUGGGgu--UGCCG---GCGCG- -5'
29981 3' -58 NC_006273.1 + 175087 0.71 0.6469
Target:  5'- gAGU-CGCCGUcUCCCGACGGCaCGcCGUc -3'
miRNA:   3'- -UUAuGCGGCAuGGGGUUGCCG-GC-GCG- -5'
29981 3' -58 NC_006273.1 + 173803 0.79 0.262486
Target:  5'- --cGCGCgGUGgCCaAACGGCCGCGCg -3'
miRNA:   3'- uuaUGCGgCAUgGGgUUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 172184 0.66 0.910128
Target:  5'- --gACGCCGUcaagcggaggcaaagGCgaggCCgCGcCGGCCGCGCc -3'
miRNA:   3'- uuaUGCGGCA---------------UG----GG-GUuGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 171618 0.69 0.788677
Target:  5'- --cACGCCGUcCUCCGAgaggcgcgccCGGCCacGCGCc -3'
miRNA:   3'- uuaUGCGGCAuGGGGUU----------GCCGG--CGCG- -5'
29981 3' -58 NC_006273.1 + 171350 0.66 0.889207
Target:  5'- --gAgGCCGcGCCaCCAaaACcGCCGCGCc -3'
miRNA:   3'- uuaUgCGGCaUGG-GGU--UGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 171311 0.73 0.530174
Target:  5'- ---cCGCCGcUGCUCUGAUGGCCGCaGCu -3'
miRNA:   3'- uuauGCGGC-AUGGGGUUGCCGGCG-CG- -5'
29981 3' -58 NC_006273.1 + 169041 0.69 0.761791
Target:  5'- --gGCGuuGUcgUCCAACGGCUGCaGCg -3'
miRNA:   3'- uuaUGCggCAugGGGUUGCCGGCG-CG- -5'
29981 3' -58 NC_006273.1 + 168617 0.71 0.637073
Target:  5'- --aGCGCCGaGCCgCGGCugcccgGGUCGCGCa -3'
miRNA:   3'- uuaUGCGGCaUGGgGUUG------CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 167167 0.68 0.838735
Target:  5'- ---cCGCCGUuggugGCCacggcgggcgCAGCGGCCGCGg -3'
miRNA:   3'- uuauGCGGCA-----UGGg---------GUUGCCGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.