miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 39136 0.71 0.637073
Target:  5'- -uUACGCCGUGCCUuucaCGACGccgggaaaGCCGgGCu -3'
miRNA:   3'- uuAUGCGGCAUGGG----GUUGC--------CGGCgCG- -5'
29981 3' -58 NC_006273.1 + 171311 0.73 0.530174
Target:  5'- ---cCGCCGcUGCUCUGAUGGCCGCaGCu -3'
miRNA:   3'- uuauGCGGC-AUGGGGUUGCCGGCG-CG- -5'
29981 3' -58 NC_006273.1 + 194519 0.73 0.539689
Target:  5'- --aACGCCGUcgccGCCCCGAaaagcgaaGcGCUGCGCa -3'
miRNA:   3'- uuaUGCGGCA----UGGGGUUg-------C-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 197299 0.73 0.549261
Target:  5'- --gGCGCCc-GCCgCCGA-GGCCGCGCg -3'
miRNA:   3'- uuaUGCGGcaUGG-GGUUgCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 195805 0.73 0.549261
Target:  5'- --cGCGCCccccGCCCCucggucGCGGCCGCGg -3'
miRNA:   3'- uuaUGCGGca--UGGGGu-----UGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 196451 0.72 0.597795
Target:  5'- --cACGCUG-AUCCUAGCGGC-GCGCg -3'
miRNA:   3'- uuaUGCGGCaUGGGGUUGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 153345 0.72 0.606615
Target:  5'- ---cCGCCGcUGCCgcuucguccgaggCCGGCGGCaCGCGCg -3'
miRNA:   3'- uuauGCGGC-AUGG-------------GGUUGCCG-GCGCG- -5'
29981 3' -58 NC_006273.1 + 233683 0.72 0.617413
Target:  5'- --aGCGCCGUcGCCUCcuCGGC-GCGCa -3'
miRNA:   3'- uuaUGCGGCA-UGGGGuuGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 75260 0.72 0.627241
Target:  5'- --aGCGCUGgccGCCgCGGCGGCCGCc- -3'
miRNA:   3'- uuaUGCGGCa--UGGgGUUGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 19983 0.73 0.530174
Target:  5'- --cACGCCGUaucACCCgAACuGCCGuCGCg -3'
miRNA:   3'- uuaUGCGGCA---UGGGgUUGcCGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 103539 0.73 0.520721
Target:  5'- ---cCGCCGUagccggccaGCCCCA--GGCCGUGCg -3'
miRNA:   3'- uuauGCGGCA---------UGGGGUugCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 38188 0.74 0.502019
Target:  5'- --gACGCCGaGCCCgCGccGCGGCCGCu- -3'
miRNA:   3'- uuaUGCGGCaUGGG-GU--UGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 154994 0.79 0.280995
Target:  5'- -cUGCGCCGcUGCCgCCGccACGGCCGcCGCu -3'
miRNA:   3'- uuAUGCGGC-AUGG-GGU--UGCCGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 190598 0.78 0.314118
Target:  5'- ---cCGCCG-GCgCCCAuCGGCCGCGCg -3'
miRNA:   3'- uuauGCGGCaUG-GGGUuGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 152600 0.76 0.384138
Target:  5'- -cUGCGCCagcgggugugucucgGUGgCCCGcugcACGGCCGCGCg -3'
miRNA:   3'- uuAUGCGG---------------CAUgGGGU----UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 204338 0.76 0.388945
Target:  5'- gGGUGCGCCG-ACCUUgaaAugGGUCGCGCu -3'
miRNA:   3'- -UUAUGCGGCaUGGGG---UugCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 90352 0.75 0.429639
Target:  5'- ----gGCCGUACCgCCGGCGcugggauGCCGCGCc -3'
miRNA:   3'- uuaugCGGCAUGG-GGUUGC-------CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 154554 0.75 0.44783
Target:  5'- --gGCGCUGcGCCCC-GCGGCCGaCGUc -3'
miRNA:   3'- uuaUGCGGCaUGGGGuUGCCGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 234348 0.75 0.456641
Target:  5'- --gACGCCGUGgCCCGGCGucGCCguagGCGCa -3'
miRNA:   3'- uuaUGCGGCAUgGGGUUGC--CGG----CGCG- -5'
29981 3' -58 NC_006273.1 + 233000 0.74 0.502019
Target:  5'- --gGCGCCGacucgcGCCCCAGCG-CCaGCGCg -3'
miRNA:   3'- uuaUGCGGCa-----UGGGGUUGCcGG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.