miRNA display CGI


Results 61 - 80 of 334 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 75260 0.72 0.627241
Target:  5'- --aGCGCUGgccGCCgCGGCGGCCGCc- -3'
miRNA:   3'- uuaUGCGGCa--UGGgGUUGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 39136 0.71 0.637073
Target:  5'- -uUACGCCGUGCCUuucaCGACGccgggaaaGCCGgGCu -3'
miRNA:   3'- uuAUGCGGCAUGGG----GUUGC--------CGGCgCG- -5'
29981 3' -58 NC_006273.1 + 43028 0.7 0.705378
Target:  5'- ----aGCCGcgacGCgCC-ACGGCCGCGCa -3'
miRNA:   3'- uuaugCGGCa---UGgGGuUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 91440 0.7 0.71497
Target:  5'- ----aGCCGcggGCCCCAcCGGCgcuaGCGCg -3'
miRNA:   3'- uuaugCGGCa--UGGGGUuGCCGg---CGCG- -5'
29981 3' -58 NC_006273.1 + 136493 0.7 0.71497
Target:  5'- gGAU-CGCCGUuuGCCCgaAGCGGCUGUGg -3'
miRNA:   3'- -UUAuGCGGCA--UGGGg-UUGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 36354 0.7 0.724498
Target:  5'- --cGCGCaCGaaGCCCCugaGGUCGCGCg -3'
miRNA:   3'- uuaUGCG-GCa-UGGGGuugCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 46904 0.7 0.724498
Target:  5'- gGGUGCGCgCGUcUCCCGA-GGCCgagGCGCg -3'
miRNA:   3'- -UUAUGCG-GCAuGGGGUUgCCGG---CGCG- -5'
29981 3' -58 NC_006273.1 + 233417 0.7 0.724498
Target:  5'- --gACGUCGU-CCCCGucgcCGGCCccgccGCGCa -3'
miRNA:   3'- uuaUGCGGCAuGGGGUu---GCCGG-----CGCG- -5'
29981 3' -58 NC_006273.1 + 37223 0.7 0.728288
Target:  5'- --gACGCgCGUGCCCaggcagaggaaggcgCGACGGCgGCGa -3'
miRNA:   3'- uuaUGCG-GCAUGGG---------------GUUGCCGgCGCg -5'
29981 3' -58 NC_006273.1 + 233235 0.7 0.742391
Target:  5'- ---cCGCCGUcgcguccGCCCCGACcaCCGCGUg -3'
miRNA:   3'- uuauGCGGCA-------UGGGGUUGccGGCGCG- -5'
29981 3' -58 NC_006273.1 + 23335 0.7 0.705378
Target:  5'- uGUugGCCcUAcggaucCCCCAgcgacugugucaGCGGCUGCGCa -3'
miRNA:   3'- uUAugCGGcAU------GGGGU------------UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 198870 0.7 0.695728
Target:  5'- cGGUcCGCCGgu-CUCGACGGaCCGCGCc -3'
miRNA:   3'- -UUAuGCGGCaugGGGUUGCC-GGCGCG- -5'
29981 3' -58 NC_006273.1 + 45246 0.71 0.637073
Target:  5'- -uUGC-CCGUGCcgCCCGGCGGCUGCucGCg -3'
miRNA:   3'- uuAUGcGGCAUG--GGGUUGCCGGCG--CG- -5'
29981 3' -58 NC_006273.1 + 36551 0.71 0.6469
Target:  5'- --gAgGCCGagaGCCCCAgaucGCGcGCCGUGCg -3'
miRNA:   3'- uuaUgCGGCa--UGGGGU----UGC-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 82500 0.71 0.6469
Target:  5'- --cGCGCCacccacgGCCCCAAUGGCUaCGCc -3'
miRNA:   3'- uuaUGCGGca-----UGGGGUUGCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 77941 0.71 0.686029
Target:  5'- ---uCGCCGUugCacguaguuuccaCCAACGGCUGCGg -3'
miRNA:   3'- uuauGCGGCAugG------------GGUUGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 60050 0.7 0.69476
Target:  5'- uGUACGCCGcaaaagcgaaacuUGCCCCAGuaGCCGUGa -3'
miRNA:   3'- uUAUGCGGC-------------AUGGGGUUgcCGGCGCg -5'
29981 3' -58 NC_006273.1 + 23646 0.7 0.695728
Target:  5'- --gGCGCCGcaaacaucUACCUCGACG-UCGCGCu -3'
miRNA:   3'- uuaUGCGGC--------AUGGGGUUGCcGGCGCG- -5'
29981 3' -58 NC_006273.1 + 124423 0.7 0.695728
Target:  5'- --gGCGacaCGUGCU---GCGGCCGCGCg -3'
miRNA:   3'- uuaUGCg--GCAUGGgguUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 76727 0.7 0.695728
Target:  5'- cAGUGCGCCGgcaACauccgcgucaCCAACgaGGCCGUGCu -3'
miRNA:   3'- -UUAUGCGGCa--UGg---------GGUUG--CCGGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.