miRNA display CGI


Results 101 - 120 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 113620 0.69 0.761791
Target:  5'- uGGUACGCgCGcgACCCC-GCGGUCaCGCu -3'
miRNA:   3'- -UUAUGCG-GCa-UGGGGuUGCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 122250 0.69 0.761791
Target:  5'- --aGCGgCGcGCCCUcuGCGGCCGcCGCc -3'
miRNA:   3'- uuaUGCgGCaUGGGGu-UGCCGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 234455 0.69 0.761791
Target:  5'- --aAgGCCcuccgGCCCC-GCGGCCGCGa -3'
miRNA:   3'- uuaUgCGGca---UGGGGuUGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 37276 0.69 0.765436
Target:  5'- --gACGCCGUggccgccgagcaGCCCUugcGACGGCCGgacaugccggcagucCGCg -3'
miRNA:   3'- uuaUGCGGCA------------UGGGG---UUGCCGGC---------------GCG- -5'
29981 3' -58 NC_006273.1 + 69421 0.69 0.77087
Target:  5'- cGAUG-GCCG-ACCCCuggcAUGGCgGCGCc -3'
miRNA:   3'- -UUAUgCGGCaUGGGGu---UGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 28504 0.69 0.752607
Target:  5'- --gACGCUGUAaucaCCCAugaccaugaguCGGCCGCGa -3'
miRNA:   3'- uuaUGCGGCAUg---GGGUu----------GCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 56407 0.69 0.751683
Target:  5'- --cGCGCCGUGCgcacguuCCCAggcacGCGGCCcaCGCu -3'
miRNA:   3'- uuaUGCGGCAUG-------GGGU-----UGCCGGc-GCG- -5'
29981 3' -58 NC_006273.1 + 43028 0.7 0.705378
Target:  5'- ----aGCCGcgacGCgCC-ACGGCCGCGCa -3'
miRNA:   3'- uuaugCGGCa---UGgGGuUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 91440 0.7 0.71497
Target:  5'- ----aGCCGcggGCCCCAcCGGCgcuaGCGCg -3'
miRNA:   3'- uuaugCGGCa--UGGGGUuGCCGg---CGCG- -5'
29981 3' -58 NC_006273.1 + 136493 0.7 0.71497
Target:  5'- gGAU-CGCCGUuuGCCCgaAGCGGCUGUGg -3'
miRNA:   3'- -UUAuGCGGCA--UGGGg-UUGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 36354 0.7 0.724498
Target:  5'- --cGCGCaCGaaGCCCCugaGGUCGCGCg -3'
miRNA:   3'- uuaUGCG-GCa-UGGGGuugCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 46904 0.7 0.724498
Target:  5'- gGGUGCGCgCGUcUCCCGA-GGCCgagGCGCg -3'
miRNA:   3'- -UUAUGCG-GCAuGGGGUUgCCGG---CGCG- -5'
29981 3' -58 NC_006273.1 + 233417 0.7 0.724498
Target:  5'- --gACGUCGU-CCCCGucgcCGGCCccgccGCGCa -3'
miRNA:   3'- uuaUGCGGCAuGGGGUu---GCCGG-----CGCG- -5'
29981 3' -58 NC_006273.1 + 37223 0.7 0.728288
Target:  5'- --gACGCgCGUGCCCaggcagaggaaggcgCGACGGCgGCGa -3'
miRNA:   3'- uuaUGCG-GCAUGGG---------------GUUGCCGgCGCg -5'
29981 3' -58 NC_006273.1 + 233235 0.7 0.742391
Target:  5'- ---cCGCCGUcgcguccGCCCCGACcaCCGCGUg -3'
miRNA:   3'- uuauGCGGCA-------UGGGGUUGccGGCGCG- -5'
29981 3' -58 NC_006273.1 + 72359 0.7 0.743324
Target:  5'- uGAUGCGCC-UGCUguCCGGCGcCCGCGUg -3'
miRNA:   3'- -UUAUGCGGcAUGG--GGUUGCcGGCGCG- -5'
29981 3' -58 NC_006273.1 + 73134 0.7 0.743324
Target:  5'- -cUGCGCCGcaaacUGCgCCggUGGCUGCGa -3'
miRNA:   3'- uuAUGCGGC-----AUGgGGuuGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 94083 0.7 0.743324
Target:  5'- cAUGCGCCGguauuuUUCCAcuggGCGGCCGCa- -3'
miRNA:   3'- uUAUGCGGCau----GGGGU----UGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 103779 0.7 0.743324
Target:  5'- --cGCGCgCGUGCCa----GGCCGUGCg -3'
miRNA:   3'- uuaUGCG-GCAUGGgguugCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 233802 0.7 0.743324
Target:  5'- --cGCGCCGUGCCgaaaCCAcucgucCGcGUCGCGCg -3'
miRNA:   3'- uuaUGCGGCAUGG----GGUu-----GC-CGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.