miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 91961 0.72 0.588017
Target:  5'- ---uUGCCGUuCUCCAACgcgcggcaGGCCGCGCc -3'
miRNA:   3'- uuauGCGGCAuGGGGUUG--------CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 913 0.73 0.549261
Target:  5'- --cGCGCCccccGCCCCucggucGCGGCCGCGg -3'
miRNA:   3'- uuaUGCGGca--UGGGGu-----UGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 125245 0.75 0.465545
Target:  5'- -uUGCuGCUGUAUCCC-ACGGCCGUGg -3'
miRNA:   3'- uuAUG-CGGCAUGGGGuUGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 68196 0.79 0.262486
Target:  5'- -uUACGCCG-GCCUCcGCGGCCGCuGCg -3'
miRNA:   3'- uuAUGCGGCaUGGGGuUGCCGGCG-CG- -5'
29981 3' -58 NC_006273.1 + 213458 0.71 0.6469
Target:  5'- --aGCGCCGUcuACCcgaugCCGGCGGCUGCa- -3'
miRNA:   3'- uuaUGCGGCA--UGG-----GGUUGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 108871 0.72 0.627241
Target:  5'- --cGCGCacgaGUACCaCAACuGGCUGCGCu -3'
miRNA:   3'- uuaUGCGg---CAUGGgGUUG-CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 234457 0.73 0.539689
Target:  5'- --aACGCCGUcgccGCCCCGAaaagcgaaGcGCUGCGCa -3'
miRNA:   3'- uuaUGCGGCA----UGGGGUUg-------C-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 193997 0.8 0.253027
Target:  5'- --gGCGCCGUugcccggggauaugaACCCCGccaACuGGCCGCGCg -3'
miRNA:   3'- uuaUGCGGCA---------------UGGGGU---UG-CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 38791 0.72 0.617413
Target:  5'- --aGCGCCGUcGCCUCcuCGGC-GCGCa -3'
miRNA:   3'- uuaUGCGGCA-UGGGGuuGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 1855 0.83 0.151819
Target:  5'- --gGCGCCGcACCCCGcgucgcugcugACGGCCGUGCg -3'
miRNA:   3'- uuaUGCGGCaUGGGGU-----------UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 2406 0.73 0.549261
Target:  5'- --gGCGCCc-GCCgCCGA-GGCCGCGCg -3'
miRNA:   3'- uuaUGCGGcaUGG-GGUUgCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 1558 0.72 0.597795
Target:  5'- --cACGCUG-AUCCUAGCGGC-GCGCg -3'
miRNA:   3'- uuaUGCGGCaUGGGGUUGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 38107 0.74 0.502019
Target:  5'- --gGCGCCGacucgcGCCCCAGCG-CCaGCGCg -3'
miRNA:   3'- uuaUGCGGCa-----UGGGGUUGCcGG-CGCG- -5'
29981 3' -58 NC_006273.1 + 154421 0.75 0.465545
Target:  5'- ----gGCCGUGCCCgacgaCAGCucguGGCCGCGCu -3'
miRNA:   3'- uuaugCGGCAUGGG-----GUUG----CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 92240 0.76 0.397043
Target:  5'- --cGCGCCGUGCCCgucuccugaaaGACGGCCacacaGCGCu -3'
miRNA:   3'- uuaUGCGGCAUGGGg----------UUGCCGG-----CGCG- -5'
29981 3' -58 NC_006273.1 + 173803 0.79 0.262486
Target:  5'- --cGCGCgGUGgCCaAACGGCCGCGCg -3'
miRNA:   3'- uuaUGCGgCAUgGGgUUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 13585 0.71 0.666517
Target:  5'- ---cCGCCGggcgGCCCgGGCcGCCGUGCu -3'
miRNA:   3'- uuauGCGGCa---UGGGgUUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 92581 0.71 0.656718
Target:  5'- --cACGcCCGUGCCCaccagCGACGGCgGCuGCu -3'
miRNA:   3'- uuaUGC-GGCAUGGG-----GUUGCCGgCG-CG- -5'
29981 3' -58 NC_006273.1 + 68335 0.71 0.6469
Target:  5'- cAUGCgGCUGcacgACUCC-ACGGCCGUGCa -3'
miRNA:   3'- uUAUG-CGGCa---UGGGGuUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 68223 0.72 0.627241
Target:  5'- ---cCGCCGUgGCCaCCAACGGCgGCa- -3'
miRNA:   3'- uuauGCGGCA-UGG-GGUUGCCGgCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.