miRNA display CGI


Results 41 - 60 of 334 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 175087 0.71 0.6469
Target:  5'- gAGU-CGCCGUcUCCCGACGGCaCGcCGUc -3'
miRNA:   3'- -UUAuGCGGCAuGGGGUUGCCG-GC-GCG- -5'
29981 3' -58 NC_006273.1 + 234457 0.73 0.539689
Target:  5'- --aACGCCGUcgccGCCCCGAaaagcgaaGcGCUGCGCa -3'
miRNA:   3'- uuaUGCGGCA----UGGGGUUg-------C-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 193997 0.8 0.253027
Target:  5'- --gGCGCCGUugcccggggauaugaACCCCGccaACuGGCCGCGCg -3'
miRNA:   3'- uuaUGCGGCA---------------UGGGGU---UG-CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 70327 0.71 0.6469
Target:  5'- --cGCGCCGUGCgucugCCCGugagcaccGCuGCCGCGCc -3'
miRNA:   3'- uuaUGCGGCAUG-----GGGU--------UGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 1855 0.83 0.151819
Target:  5'- --gGCGCCGcACCCCGcgucgcugcugACGGCCGUGCg -3'
miRNA:   3'- uuaUGCGGCaUGGGGU-----------UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 153891 0.69 0.749832
Target:  5'- --gACGCCGUGCucuucuucgacucgCCCGaaaACGugucGCCGCGCu -3'
miRNA:   3'- uuaUGCGGCAUG--------------GGGU---UGC----CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 173803 0.79 0.262486
Target:  5'- --cGCGCgGUGgCCaAACGGCCGCGCg -3'
miRNA:   3'- uuaUGCGgCAUgGGgUUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 101471 0.7 0.733951
Target:  5'- ----aGCCcuucUACCUCAugGGCCGCGa -3'
miRNA:   3'- uuaugCGGc---AUGGGGUugCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 201612 0.7 0.71879
Target:  5'- --aACGCCGUGCUggcccugcguaucauUCGGCuGCUGCGCg -3'
miRNA:   3'- uuaUGCGGCAUGG---------------GGUUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 147140 0.7 0.70634
Target:  5'- --gACGCCGagaacuuggauugcgACCCCGaagugAUGGCCGUGUa -3'
miRNA:   3'- uuaUGCGGCa--------------UGGGGU-----UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 38910 0.7 0.705378
Target:  5'- --cGCGCCGUGCCgaaCCAcucgucCGcGUCGCGCg -3'
miRNA:   3'- uuaUGCGGCAUGG---GGUu-----GC-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 13585 0.71 0.666517
Target:  5'- ---cCGCCGggcgGCCCgGGCcGCCGUGCu -3'
miRNA:   3'- uuauGCGGCa---UGGGgUUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 92581 0.71 0.656718
Target:  5'- --cACGcCCGUGCCCaccagCGACGGCgGCuGCu -3'
miRNA:   3'- uuaUGC-GGCAUGGG-----GUUGCCGgCG-CG- -5'
29981 3' -58 NC_006273.1 + 28808 0.71 0.637073
Target:  5'- -cUACGCCGggGCCCUA--GGCCGCa- -3'
miRNA:   3'- uuAUGCGGCa-UGGGGUugCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 38791 0.72 0.617413
Target:  5'- --aGCGCCGUcGCCUCcuCGGC-GCGCa -3'
miRNA:   3'- uuaUGCGGCA-UGGGGuuGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 91961 0.72 0.588017
Target:  5'- ---uUGCCGUuCUCCAACgcgcggcaGGCCGCGCc -3'
miRNA:   3'- uuauGCGGCAuGGGGUUG--------CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 913 0.73 0.549261
Target:  5'- --cGCGCCccccGCCCCucggucGCGGCCGCGg -3'
miRNA:   3'- uuaUGCGGca--UGGGGu-----UGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 38107 0.74 0.502019
Target:  5'- --gGCGCCGacucgcGCCCCAGCG-CCaGCGCg -3'
miRNA:   3'- uuaUGCGGCa-----UGGGGUUGCcGG-CGCG- -5'
29981 3' -58 NC_006273.1 + 154421 0.75 0.465545
Target:  5'- ----gGCCGUGCCCgacgaCAGCucguGGCCGCGCu -3'
miRNA:   3'- uuaugCGGCAUGGG-----GUUG----CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 92240 0.76 0.397043
Target:  5'- --cGCGCCGUGCCCgucuccugaaaGACGGCCacacaGCGCu -3'
miRNA:   3'- uuaUGCGGCAUGGGg----------UUGCCGG-----CGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.