miRNA display CGI


Results 61 - 80 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 92581 0.71 0.656718
Target:  5'- --cACGcCCGUGCCCaccagCGACGGCgGCuGCu -3'
miRNA:   3'- uuaUGC-GGCAUGGG-----GUUGCCGgCG-CG- -5'
29981 3' -58 NC_006273.1 + 150530 0.71 0.67629
Target:  5'- ----aGCCcuccACCCUGACGGCCGcCGCg -3'
miRNA:   3'- uuaugCGGca--UGGGGUUGCCGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 118351 0.78 0.293901
Target:  5'- --cACGCUGUugCCCAACaGGCCGUaGCu -3'
miRNA:   3'- uuaUGCGGCAugGGGUUG-CCGGCG-CG- -5'
29981 3' -58 NC_006273.1 + 162587 0.76 0.411056
Target:  5'- -cUGCGCCGUcugcggcucuacccGCCCgAGCGGCUGCacGCg -3'
miRNA:   3'- uuAUGCGGCA--------------UGGGgUUGCCGGCG--CG- -5'
29981 3' -58 NC_006273.1 + 67726 0.74 0.483617
Target:  5'- --gGCgGCCG-ACCCCGccguuGCGGCCGcCGCu -3'
miRNA:   3'- uuaUG-CGGCaUGGGGU-----UGCCGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 188495 0.73 0.520721
Target:  5'- --gACGCgCGcaGCCCCAGCGcGUCGCGUa -3'
miRNA:   3'- uuaUGCG-GCa-UGGGGUUGC-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 101338 0.73 0.565651
Target:  5'- cGUAuCGCCGUggagggcaacaccaACCaggCGGCGGCCGUGCg -3'
miRNA:   3'- uUAU-GCGGCA--------------UGGg--GUUGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 1558 0.72 0.597795
Target:  5'- --cACGCUG-AUCCUAGCGGC-GCGCg -3'
miRNA:   3'- uuaUGCGGCaUGGGGUUGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 108871 0.72 0.627241
Target:  5'- --cGCGCacgaGUACCaCAACuGGCUGCGCu -3'
miRNA:   3'- uuaUGCGg---CAUGGgGUUG-CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 168617 0.71 0.637073
Target:  5'- --aGCGCCGaGCCgCGGCugcccgGGUCGCGCa -3'
miRNA:   3'- uuaUGCGGCaUGGgGUUG------CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 204704 0.68 0.805963
Target:  5'- gGGUGuCGCCGgcgaGCCCCGA-GGC-GCGCc -3'
miRNA:   3'- -UUAU-GCGGCa---UGGGGUUgCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 160748 0.68 0.797389
Target:  5'- aAGUACGCCGccuuCCUCAaguacgugcACGGCgacUGCGCg -3'
miRNA:   3'- -UUAUGCGGCau--GGGGU---------UGCCG---GCGCG- -5'
29981 3' -58 NC_006273.1 + 178361 0.7 0.705378
Target:  5'- -uUGCGCCGUcACCa-AACuGCCGUGCa -3'
miRNA:   3'- uuAUGCGGCA-UGGggUUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 70796 0.7 0.71497
Target:  5'- --gAC-CCGUACUgCGACGGCaGCGCc -3'
miRNA:   3'- uuaUGcGGCAUGGgGUUGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 101471 0.7 0.733951
Target:  5'- ----aGCCcuucUACCUCAugGGCCGCGa -3'
miRNA:   3'- uuaugCGGc---AUGGGGUugCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 153891 0.69 0.749832
Target:  5'- --gACGCCGUGCucuucuucgacucgCCCGaaaACGugucGCCGCGCu -3'
miRNA:   3'- uuaUGCGGCAUG--------------GGGU---UGC----CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 169041 0.69 0.761791
Target:  5'- --gGCGuuGUcgUCCAACGGCUGCaGCg -3'
miRNA:   3'- uuaUGCggCAugGGGUUGCCGGCG-CG- -5'
29981 3' -58 NC_006273.1 + 2481 0.69 0.77087
Target:  5'- --cGCGCUGcaccUGCaCCC-GCGcGCCGCGCu -3'
miRNA:   3'- uuaUGCGGC----AUG-GGGuUGC-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 145943 0.69 0.779834
Target:  5'- -cUACGCCGUGgCCUucCaGCCGCuGCu -3'
miRNA:   3'- uuAUGCGGCAUgGGGuuGcCGGCG-CG- -5'
29981 3' -58 NC_006273.1 + 49968 0.69 0.788677
Target:  5'- -cUGCGCgGUGCUgguccaCCAcguCGGCCGCGa -3'
miRNA:   3'- uuAUGCGgCAUGG------GGUu--GCCGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.