miRNA display CGI


Results 81 - 100 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 99329 0.7 0.712099
Target:  5'- cGGUGCGUCGU-CCUCAucuccgcucggaacGCGGCC-CGCg -3'
miRNA:   3'- -UUAUGCGGCAuGGGGU--------------UGCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 69989 0.7 0.724498
Target:  5'- -uUACGCCGgagGCCgCCAACu-CCGUGCu -3'
miRNA:   3'- uuAUGCGGCa--UGG-GGUUGccGGCGCG- -5'
29981 3' -58 NC_006273.1 + 215664 0.7 0.733951
Target:  5'- ----aGCCGUggGCCCacuGCGGCCGCu- -3'
miRNA:   3'- uuaugCGGCA--UGGGgu-UGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 161514 0.69 0.752607
Target:  5'- --gGCGC---GCCCgCAuguCGGCCGCGCu -3'
miRNA:   3'- uuaUGCGgcaUGGG-GUu--GCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 39562 0.69 0.761791
Target:  5'- --aAgGCCcuccgGCCCC-GCGGCCGCGa -3'
miRNA:   3'- uuaUgCGGca---UGGGGuUGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 145943 0.69 0.779834
Target:  5'- -cUACGCCGUGgCCUucCaGCCGCuGCu -3'
miRNA:   3'- uuAUGCGGCAUgGGGuuGcCGGCG-CG- -5'
29981 3' -58 NC_006273.1 + 49968 0.69 0.788677
Target:  5'- -cUGCGCgGUGCUgguccaCCAcguCGGCCGCGa -3'
miRNA:   3'- uuAUGCGgCAUGG------GGUu--GCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 168617 0.71 0.637073
Target:  5'- --aGCGCCGaGCCgCGGCugcccgGGUCGCGCa -3'
miRNA:   3'- uuaUGCGGCaUGGgGUUG------CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 108871 0.72 0.627241
Target:  5'- --cGCGCacgaGUACCaCAACuGGCUGCGCu -3'
miRNA:   3'- uuaUGCGg---CAUGGgGUUG-CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 1558 0.72 0.597795
Target:  5'- --cACGCUG-AUCCUAGCGGC-GCGCg -3'
miRNA:   3'- uuaUGCGGCaUGGGGUUGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 153814 0.68 0.820202
Target:  5'- -uUugGCCGUguccuuggcgcgagACCCUgGugGGUCGCGUg -3'
miRNA:   3'- uuAugCGGCA--------------UGGGG-UugCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 86458 0.68 0.830785
Target:  5'- --aGCGUCGU-CgCUCGGCGGgUGCGCa -3'
miRNA:   3'- uuaUGCGGCAuG-GGGUUGCCgGCGCG- -5'
29981 3' -58 NC_006273.1 + 155133 0.68 0.838735
Target:  5'- --cGCGuuGUuucguggcuaAUgCCGAgGGCCGCGCc -3'
miRNA:   3'- uuaUGCggCA----------UGgGGUUgCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 197736 0.67 0.846512
Target:  5'- --cGCGCCGU-CaaCAGCGugccuuuuGCCGCGCg -3'
miRNA:   3'- uuaUGCGGCAuGggGUUGC--------CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 41849 0.67 0.86152
Target:  5'- --aACGCCGUGCaCCacaAACucuGCgGCGCg -3'
miRNA:   3'- uuaUGCGGCAUG-GGg--UUGc--CGgCGCG- -5'
29981 3' -58 NC_006273.1 + 118351 0.78 0.293901
Target:  5'- --cACGCUGUugCCCAACaGGCCGUaGCu -3'
miRNA:   3'- uuaUGCGGCAugGGGUUG-CCGGCG-CG- -5'
29981 3' -58 NC_006273.1 + 162587 0.76 0.411056
Target:  5'- -cUGCGCCGUcugcggcucuacccGCCCgAGCGGCUGCacGCg -3'
miRNA:   3'- uuAUGCGGCA--------------UGGGgUUGCCGGCG--CG- -5'
29981 3' -58 NC_006273.1 + 67726 0.74 0.483617
Target:  5'- --gGCgGCCG-ACCCCGccguuGCGGCCGcCGCu -3'
miRNA:   3'- uuaUG-CGGCaUGGGGU-----UGCCGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 188495 0.73 0.520721
Target:  5'- --gACGCgCGcaGCCCCAGCGcGUCGCGUa -3'
miRNA:   3'- uuaUGCG-GCa-UGGGGUUGC-CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 101338 0.73 0.565651
Target:  5'- cGUAuCGCCGUggagggcaacaccaACCaggCGGCGGCCGUGCg -3'
miRNA:   3'- uUAU-GCGGCA--------------UGGg--GUUGCCGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.