miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 5' -56.3 NC_006273.1 + 94718 0.66 0.952011
Target:  5'- gUCGuCGCCugcGGCGUUggcGCAGGGAauucguaGCCGc -3'
miRNA:   3'- -AGU-GCGGu--CCGCAA---CGUCUCUg------UGGU- -5'
29981 5' -56.3 NC_006273.1 + 73167 0.66 0.952011
Target:  5'- aCACGCagacGGCGgagGCGGuAGACGCg- -3'
miRNA:   3'- aGUGCGgu--CCGCaa-CGUC-UCUGUGgu -5'
29981 5' -56.3 NC_006273.1 + 118283 0.66 0.952011
Target:  5'- gCGCGCuCAGGcCGgcgUGguGA-ACGCCAg -3'
miRNA:   3'- aGUGCG-GUCC-GCa--ACguCUcUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 182793 0.66 0.951613
Target:  5'- -gAgGCUcucaaaaAGGCccUGCGGAGGCACCGg -3'
miRNA:   3'- agUgCGG-------UCCGcaACGUCUCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 31840 0.66 0.947939
Target:  5'- aCGCGUCGuGCGUcaGCAG-GACGCCu -3'
miRNA:   3'- aGUGCGGUcCGCAa-CGUCuCUGUGGu -5'
29981 5' -56.3 NC_006273.1 + 140776 0.66 0.94539
Target:  5'- cCGCGgCGGGUGgaccgggaagccgGCGGAGGuCGCCGg -3'
miRNA:   3'- aGUGCgGUCCGCaa-----------CGUCUCU-GUGGU- -5'
29981 5' -56.3 NC_006273.1 + 106216 0.66 0.943645
Target:  5'- cCACGUaCAGGUGccGCGG-GugGCCAg -3'
miRNA:   3'- aGUGCG-GUCCGCaaCGUCuCugUGGU- -5'
29981 5' -56.3 NC_006273.1 + 158759 0.66 0.943645
Target:  5'- gUCGCGCCAGuGCGccGUc--GACGCCGc -3'
miRNA:   3'- -AGUGCGGUC-CGCaaCGucuCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 167180 0.66 0.943645
Target:  5'- cCACGgCGGGCGcaGCGGccgcGGAgGCCGg -3'
miRNA:   3'- aGUGCgGUCCGCaaCGUC----UCUgUGGU- -5'
29981 5' -56.3 NC_006273.1 + 230385 0.66 0.943645
Target:  5'- aCGCGUCAGcccGCGcucgGCAGAGcUACCAu -3'
miRNA:   3'- aGUGCGGUC---CGCaa--CGUCUCuGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 39422 0.66 0.943204
Target:  5'- -gGCGCCcGGCGgcccGCGGgguucuacccgguGGACGCCGu -3'
miRNA:   3'- agUGCGGuCCGCaa--CGUC-------------UCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 234315 0.66 0.943204
Target:  5'- -gGCGCCcGGCGgcccGCGGgguucuacccgguGGACGCCGu -3'
miRNA:   3'- agUGCGGuCCGCaa--CGUC-------------UCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 98677 0.66 0.939127
Target:  5'- uUUACGuCCAGGC---GCAGcuGCACCAa -3'
miRNA:   3'- -AGUGC-GGUCCGcaaCGUCucUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 30451 0.66 0.939127
Target:  5'- aCACGCC-GGCGgaugaggagGCGGAGgACAgCGu -3'
miRNA:   3'- aGUGCGGuCCGCaa-------CGUCUC-UGUgGU- -5'
29981 5' -56.3 NC_006273.1 + 120001 0.66 0.938663
Target:  5'- -gGCGUCAGGCGUcgugggccaaaguUGUuGAGGucCACCAg -3'
miRNA:   3'- agUGCGGUCCGCA-------------ACGuCUCU--GUGGU- -5'
29981 5' -56.3 NC_006273.1 + 34007 0.66 0.937727
Target:  5'- cUCA-GCUcGGCGUgcuccaaacgggaaUGguGGGACGCCAc -3'
miRNA:   3'- -AGUgCGGuCCGCA--------------ACguCUCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 214147 0.66 0.934382
Target:  5'- cUCGCuCCAGGCGaucaGCAGcGGCAgCCAc -3'
miRNA:   3'- -AGUGcGGUCCGCaa--CGUCuCUGU-GGU- -5'
29981 5' -56.3 NC_006273.1 + 133465 0.66 0.934382
Target:  5'- aUCGCaGUCAcGGCGgcgUGCAGgcgcGGACGCUg -3'
miRNA:   3'- -AGUG-CGGU-CCGCa--ACGUC----UCUGUGGu -5'
29981 5' -56.3 NC_006273.1 + 134871 0.66 0.92941
Target:  5'- --cCGCCAGGUGagGCGG-GAuCGCCGu -3'
miRNA:   3'- aguGCGGUCCGCaaCGUCuCU-GUGGU- -5'
29981 5' -56.3 NC_006273.1 + 114438 0.66 0.92941
Target:  5'- -gACGCCccGCGUcaccgGCGGcGGCGCCAu -3'
miRNA:   3'- agUGCGGucCGCAa----CGUCuCUGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.