miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 5' -56.3 NC_006273.1 + 138028 0.66 0.92941
Target:  5'- -gACGCUAGGCGgcGCc--GGCGCCu -3'
miRNA:   3'- agUGCGGUCCGCaaCGucuCUGUGGu -5'
29981 5' -56.3 NC_006273.1 + 66835 0.67 0.924209
Target:  5'- -aGCGCUAGGCGgccUGCAGcuAC-CCGa -3'
miRNA:   3'- agUGCGGUCCGCa--ACGUCucUGuGGU- -5'
29981 5' -56.3 NC_006273.1 + 113731 0.67 0.924209
Target:  5'- -aGCGCCGgagguGGCGacgGCGGcGGCGCCGu -3'
miRNA:   3'- agUGCGGU-----CCGCaa-CGUCuCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 100279 0.67 0.91878
Target:  5'- aCGCGCgAcGGCGUaGC-GAGACgGCCAc -3'
miRNA:   3'- aGUGCGgU-CCGCAaCGuCUCUG-UGGU- -5'
29981 5' -56.3 NC_006273.1 + 129285 0.67 0.913124
Target:  5'- cCAUuCCAGGCGaUUGCAGaAGGUGCCGa -3'
miRNA:   3'- aGUGcGGUCCGC-AACGUC-UCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 164460 0.67 0.913124
Target:  5'- gUCGCGcCCAGGCGUccagGCAacccGAgGCCGg -3'
miRNA:   3'- -AGUGC-GGUCCGCAa---CGUcu--CUgUGGU- -5'
29981 5' -56.3 NC_006273.1 + 101767 0.67 0.913124
Target:  5'- gUCA-GCUAGGCacgcaGCAGAGcCACCAg -3'
miRNA:   3'- -AGUgCGGUCCGcaa--CGUCUCuGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 52827 0.67 0.912545
Target:  5'- aUUACGCCAuguuggcGGCGUaaccggUGCcGAGaACGCCGg -3'
miRNA:   3'- -AGUGCGGU-------CCGCA------ACGuCUC-UGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 133952 0.67 0.907241
Target:  5'- uUCugGUCGGGCGUgugGUAGaAGAgCACgCGg -3'
miRNA:   3'- -AGugCGGUCCGCAa--CGUC-UCU-GUG-GU- -5'
29981 5' -56.3 NC_006273.1 + 102991 0.67 0.907241
Target:  5'- gUCGCGCCAGac----CGGAGACGCCGu -3'
miRNA:   3'- -AGUGCGGUCcgcaacGUCUCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 105843 0.67 0.907241
Target:  5'- gUCACaGCCgAGGCGgcGCGGcGcaGCGCCGg -3'
miRNA:   3'- -AGUG-CGG-UCCGCaaCGUCuC--UGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 30662 0.68 0.894804
Target:  5'- aCGCGCCGGGCGgcuuccUGCGGccGGCcgcgguGCCGg -3'
miRNA:   3'- aGUGCGGUCCGCa-----ACGUCu-CUG------UGGU- -5'
29981 5' -56.3 NC_006273.1 + 205336 0.68 0.894804
Target:  5'- gCAgGCCAGGUGUUGCccguGGucuGGcCGCCGg -3'
miRNA:   3'- aGUgCGGUCCGCAACG----UCu--CU-GUGGU- -5'
29981 5' -56.3 NC_006273.1 + 171046 0.68 0.892863
Target:  5'- --gUGUCGGGCGUcaUGCGGAGucgcggcgguugggGCGCCGa -3'
miRNA:   3'- aguGCGGUCCGCA--ACGUCUC--------------UGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 14012 0.68 0.888256
Target:  5'- -gGCGCgGGGUGgcggaGCGGGGAgCGCCGa -3'
miRNA:   3'- agUGCGgUCCGCaa---CGUCUCU-GUGGU- -5'
29981 5' -56.3 NC_006273.1 + 1993 0.68 0.888256
Target:  5'- gUCGCGCCAgcGGCGagcgGCacGGAGACggagGCCGc -3'
miRNA:   3'- -AGUGCGGU--CCGCaa--CG--UCUCUG----UGGU- -5'
29981 5' -56.3 NC_006273.1 + 163137 0.68 0.888256
Target:  5'- ---gGCUgAGGCG--GCGGAGGCACCAc -3'
miRNA:   3'- agugCGG-UCCGCaaCGUCUCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 78713 0.68 0.888256
Target:  5'- gUCGCGggccugcaCCAGGCGgcGCaAGAuACGCCAg -3'
miRNA:   3'- -AGUGC--------GGUCCGCaaCG-UCUcUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 155161 0.68 0.887589
Target:  5'- cCGCGCCcagguAGGcCGUuacugucUGCAG-GACGCCGu -3'
miRNA:   3'- aGUGCGG-----UCC-GCA-------ACGUCuCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 66216 0.68 0.881492
Target:  5'- -gACGUCGGGUGUUGCAacgucaacgcGAGGaaUACCAc -3'
miRNA:   3'- agUGCGGUCCGCAACGU----------CUCU--GUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.