miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 5' -56.3 NC_006273.1 + 1170 0.73 0.630764
Target:  5'- -aGCGCCAGGCGcUGaCGGAGcuggaAUACCAg -3'
miRNA:   3'- agUGCGGUCCGCaAC-GUCUC-----UGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 1993 0.68 0.888256
Target:  5'- gUCGCGCCAgcGGCGagcgGCacGGAGACggagGCCGc -3'
miRNA:   3'- -AGUGCGGU--CCGCaa--CG--UCUCUG----UGGU- -5'
29981 5' -56.3 NC_006273.1 + 6399 1.09 0.00378
Target:  5'- aUCACGCCAGGCGUUGCAGAGACACCAg -3'
miRNA:   3'- -AGUGCGGUCCGCAACGUCUCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 7681 0.68 0.874516
Target:  5'- aCAUGCCgaugguauGGGCGgcgGCGGcAGugGCCGc -3'
miRNA:   3'- aGUGCGG--------UCCGCaa-CGUC-UCugUGGU- -5'
29981 5' -56.3 NC_006273.1 + 10017 0.69 0.820206
Target:  5'- aCGuCGCCAGGUGaUGguGaAGAuCACCAa -3'
miRNA:   3'- aGU-GCGGUCCGCaACguC-UCU-GUGGU- -5'
29981 5' -56.3 NC_006273.1 + 14012 0.68 0.888256
Target:  5'- -gGCGCgGGGUGgcggaGCGGGGAgCGCCGa -3'
miRNA:   3'- agUGCGgUCCGCaa---CGUCUCU-GUGGU- -5'
29981 5' -56.3 NC_006273.1 + 26121 0.68 0.874516
Target:  5'- aCGcCGCCGGGCGcUGCGGucccGACAUgGa -3'
miRNA:   3'- aGU-GCGGUCCGCaACGUCu---CUGUGgU- -5'
29981 5' -56.3 NC_006273.1 + 27369 0.68 0.867334
Target:  5'- aCACaGCCAGacGCGUUcgucaGCAGcGACGCCGa -3'
miRNA:   3'- aGUG-CGGUC--CGCAA-----CGUCuCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 30451 0.66 0.939127
Target:  5'- aCACGCC-GGCGgaugaggagGCGGAGgACAgCGu -3'
miRNA:   3'- aGUGCGGuCCGCaa-------CGUCUC-UGUgGU- -5'
29981 5' -56.3 NC_006273.1 + 30662 0.68 0.894804
Target:  5'- aCGCGCCGGGCGgcuuccUGCGGccGGCcgcgguGCCGg -3'
miRNA:   3'- aGUGCGGUCCGCa-----ACGUCu-CUG------UGGU- -5'
29981 5' -56.3 NC_006273.1 + 31840 0.66 0.947939
Target:  5'- aCGCGUCGuGCGUcaGCAG-GACGCCu -3'
miRNA:   3'- aGUGCGGUcCGCAa-CGUCuCUGUGGu -5'
29981 5' -56.3 NC_006273.1 + 34007 0.66 0.937727
Target:  5'- cUCA-GCUcGGCGUgcuccaaacgggaaUGguGGGACGCCAc -3'
miRNA:   3'- -AGUgCGGuCCGCA--------------ACguCUCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 39422 0.66 0.943204
Target:  5'- -gGCGCCcGGCGgcccGCGGgguucuacccgguGGACGCCGu -3'
miRNA:   3'- agUGCGGuCCGCaa--CGUC-------------UCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 50704 0.69 0.852369
Target:  5'- gCACGCC-GGCGUUaggucgcuacucGCuGGGAgACCAg -3'
miRNA:   3'- aGUGCGGuCCGCAA------------CGuCUCUgUGGU- -5'
29981 5' -56.3 NC_006273.1 + 52827 0.67 0.912545
Target:  5'- aUUACGCCAuguuggcGGCGUaaccggUGCcGAGaACGCCGg -3'
miRNA:   3'- -AGUGCGGU-------CCGCA------ACGuCUC-UGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 64253 0.71 0.710135
Target:  5'- gCGgGCaCGGGCGUUGCGGcGGCgGCCGa -3'
miRNA:   3'- aGUgCG-GUCCGCAACGUCuCUG-UGGU- -5'
29981 5' -56.3 NC_006273.1 + 64481 0.68 0.874516
Target:  5'- ---aGCCAGGCGcaGCAG-GACAUCu -3'
miRNA:   3'- agugCGGUCCGCaaCGUCuCUGUGGu -5'
29981 5' -56.3 NC_006273.1 + 66216 0.68 0.881492
Target:  5'- -gACGUCGGGUGUUGCAacgucaacgcGAGGaaUACCAc -3'
miRNA:   3'- agUGCGGUCCGCAACGU----------CUCU--GUGGU- -5'
29981 5' -56.3 NC_006273.1 + 66835 0.67 0.924209
Target:  5'- -aGCGCUAGGCGgccUGCAGcuAC-CCGa -3'
miRNA:   3'- agUGCGGUCCGCa--ACGUCucUGuGGU- -5'
29981 5' -56.3 NC_006273.1 + 73167 0.66 0.952011
Target:  5'- aCACGCagacGGCGgagGCGGuAGACGCg- -3'
miRNA:   3'- aGUGCGgu--CCGCaa-CGUC-UCUGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.