miRNA display CGI


Results 41 - 60 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 5' -56.3 NC_006273.1 + 138028 0.66 0.92941
Target:  5'- -gACGCUAGGCGgcGCc--GGCGCCu -3'
miRNA:   3'- agUGCGGUCCGCaaCGucuCUGUGGu -5'
29981 5' -56.3 NC_006273.1 + 140156 0.69 0.828509
Target:  5'- aCACGCCAcagccuGGUGggGUccGAGGCGCCGa -3'
miRNA:   3'- aGUGCGGU------CCGCaaCGu-CUCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 140776 0.66 0.94539
Target:  5'- cCGCGgCGGGUGgaccgggaagccgGCGGAGGuCGCCGg -3'
miRNA:   3'- aGUGCgGUCCGCaa-----------CGUCUCU-GUGGU- -5'
29981 5' -56.3 NC_006273.1 + 141174 0.7 0.776396
Target:  5'- -uGCGCCGGGgGgcgGCGGGcACGCCGg -3'
miRNA:   3'- agUGCGGUCCgCaa-CGUCUcUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 155161 0.68 0.887589
Target:  5'- cCGCGCCcagguAGGcCGUuacugucUGCAG-GACGCCGu -3'
miRNA:   3'- aGUGCGG-----UCC-GCA-------ACGUCuCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 158759 0.66 0.943645
Target:  5'- gUCGCGCCAGuGCGccGUc--GACGCCGc -3'
miRNA:   3'- -AGUGCGGUC-CGCaaCGucuCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 159437 0.68 0.881492
Target:  5'- -gGCGCCgAGGCuuGUUGUA-AGGCACCGu -3'
miRNA:   3'- agUGCGG-UCCG--CAACGUcUCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 163137 0.68 0.888256
Target:  5'- ---gGCUgAGGCG--GCGGAGGCACCAc -3'
miRNA:   3'- agugCGG-UCCGCaaCGUCUCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 164460 0.67 0.913124
Target:  5'- gUCGCGcCCAGGCGUccagGCAacccGAgGCCGg -3'
miRNA:   3'- -AGUGC-GGUCCGCAa---CGUcu--CUgUGGU- -5'
29981 5' -56.3 NC_006273.1 + 167180 0.66 0.943645
Target:  5'- cCACGgCGGGCGcaGCGGccgcGGAgGCCGg -3'
miRNA:   3'- aGUGCgGUCCGCaaCGUC----UCUgUGGU- -5'
29981 5' -56.3 NC_006273.1 + 170846 0.73 0.640763
Target:  5'- uUCAUgGCgAGGcCGgcgGCAGGGACACCGa -3'
miRNA:   3'- -AGUG-CGgUCC-GCaa-CGUCUCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 171046 0.68 0.892863
Target:  5'- --gUGUCGGGCGUcaUGCGGAGucgcggcgguugggGCGCCGa -3'
miRNA:   3'- aguGCGGUCCGCA--ACGUCUC--------------UGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 182793 0.66 0.951613
Target:  5'- -gAgGCUcucaaaaAGGCccUGCGGAGGCACCGg -3'
miRNA:   3'- agUgCGG-------UCCGcaACGUCUCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 189839 0.7 0.767232
Target:  5'- cCACGCCGGGUGgcaucUGCggcauggcggggGGAGACGCg- -3'
miRNA:   3'- aGUGCGGUCCGCa----ACG------------UCUCUGUGgu -5'
29981 5' -56.3 NC_006273.1 + 190473 0.69 0.8516
Target:  5'- gUUGCGCCGgacGGCGUUguggcgcGCAGGGGCuCCGa -3'
miRNA:   3'- -AGUGCGGU---CCGCAA-------CGUCUCUGuGGU- -5'
29981 5' -56.3 NC_006273.1 + 196063 0.73 0.630764
Target:  5'- -aGCGCCAGGCGcUGaCGGAGcuggaAUACCAg -3'
miRNA:   3'- agUGCGGUCCGCaAC-GUCUC-----UGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 205336 0.68 0.894804
Target:  5'- gCAgGCCAGGUGUUGCccguGGucuGGcCGCCGg -3'
miRNA:   3'- aGUgCGGUCCGCAACG----UCu--CU-GUGGU- -5'
29981 5' -56.3 NC_006273.1 + 214147 0.66 0.934382
Target:  5'- cUCGCuCCAGGCGaucaGCAGcGGCAgCCAc -3'
miRNA:   3'- -AGUGcGGUCCGCaa--CGUCuCUGU-GGU- -5'
29981 5' -56.3 NC_006273.1 + 230385 0.66 0.943645
Target:  5'- aCGCGUCAGcccGCGcucgGCAGAGcUACCAu -3'
miRNA:   3'- aGUGCGGUC---CGCaa--CGUCUCuGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 234315 0.66 0.943204
Target:  5'- -gGCGCCcGGCGgcccGCGGgguucuacccgguGGACGCCGu -3'
miRNA:   3'- agUGCGGuCCGCaa--CGUC-------------UCUGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.