miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 5' -56.3 NC_006273.1 + 138028 0.66 0.92941
Target:  5'- -gACGCUAGGCGgcGCc--GGCGCCu -3'
miRNA:   3'- agUGCGGUCCGCaaCGucuCUGUGGu -5'
29981 5' -56.3 NC_006273.1 + 133952 0.67 0.907241
Target:  5'- uUCugGUCGGGCGUgugGUAGaAGAgCACgCGg -3'
miRNA:   3'- -AGugCGGUCCGCAa--CGUC-UCU-GUG-GU- -5'
29981 5' -56.3 NC_006273.1 + 102991 0.67 0.907241
Target:  5'- gUCGCGCCAGac----CGGAGACGCCGu -3'
miRNA:   3'- -AGUGCGGUCcgcaacGUCUCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 52827 0.67 0.912545
Target:  5'- aUUACGCCAuguuggcGGCGUaaccggUGCcGAGaACGCCGg -3'
miRNA:   3'- -AGUGCGGU-------CCGCA------ACGuCUC-UGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 164460 0.67 0.913124
Target:  5'- gUCGCGcCCAGGCGUccagGCAacccGAgGCCGg -3'
miRNA:   3'- -AGUGC-GGUCCGCAa---CGUcu--CUgUGGU- -5'
29981 5' -56.3 NC_006273.1 + 129285 0.67 0.913124
Target:  5'- cCAUuCCAGGCGaUUGCAGaAGGUGCCGa -3'
miRNA:   3'- aGUGcGGUCCGC-AACGUC-UCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 100279 0.67 0.91878
Target:  5'- aCGCGCgAcGGCGUaGC-GAGACgGCCAc -3'
miRNA:   3'- aGUGCGgU-CCGCAaCGuCUCUG-UGGU- -5'
29981 5' -56.3 NC_006273.1 + 66835 0.67 0.924209
Target:  5'- -aGCGCUAGGCGgccUGCAGcuAC-CCGa -3'
miRNA:   3'- agUGCGGUCCGCa--ACGUCucUGuGGU- -5'
29981 5' -56.3 NC_006273.1 + 113731 0.67 0.924209
Target:  5'- -aGCGCCGgagguGGCGacgGCGGcGGCGCCGu -3'
miRNA:   3'- agUGCGGU-----CCGCaa-CGUCuCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 163137 0.68 0.888256
Target:  5'- ---gGCUgAGGCG--GCGGAGGCACCAc -3'
miRNA:   3'- agugCGG-UCCGCaaCGUCUCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 78713 0.68 0.888256
Target:  5'- gUCGCGggccugcaCCAGGCGgcGCaAGAuACGCCAg -3'
miRNA:   3'- -AGUGC--------GGUCCGCaaCG-UCUcUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 66216 0.68 0.881492
Target:  5'- -gACGUCGGGUGUUGCAacgucaacgcGAGGaaUACCAc -3'
miRNA:   3'- agUGCGGUCCGCAACGU----------CUCU--GUGGU- -5'
29981 5' -56.3 NC_006273.1 + 64253 0.71 0.710135
Target:  5'- gCGgGCaCGGGCGUUGCGGcGGCgGCCGa -3'
miRNA:   3'- aGUgCG-GUCCGCAACGUCuCUG-UGGU- -5'
29981 5' -56.3 NC_006273.1 + 189839 0.7 0.767232
Target:  5'- cCACGCCGGGUGgcaucUGCggcauggcggggGGAGACGCg- -3'
miRNA:   3'- aGUGCGGUCCGCa----ACG------------UCUCUGUGgu -5'
29981 5' -56.3 NC_006273.1 + 91288 0.69 0.828509
Target:  5'- ---aGCaCAGGCGUacgcaCAGAGACGCCGa -3'
miRNA:   3'- agugCG-GUCCGCAac---GUCUCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 79374 0.68 0.86514
Target:  5'- cCACGCCGGuaaaaccguagaaaGCGUUGCAcguuacuuuGAG-CGCCAu -3'
miRNA:   3'- aGUGCGGUC--------------CGCAACGU---------CUCuGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 27369 0.68 0.867334
Target:  5'- aCACaGCCAGacGCGUUcgucaGCAGcGACGCCGa -3'
miRNA:   3'- aGUG-CGGUC--CGCAA-----CGUCuCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 7681 0.68 0.874516
Target:  5'- aCAUGCCgaugguauGGGCGgcgGCGGcAGugGCCGc -3'
miRNA:   3'- aGUGCGG--------UCCGCaa-CGUC-UCugUGGU- -5'
29981 5' -56.3 NC_006273.1 + 64481 0.68 0.874516
Target:  5'- ---aGCCAGGCGcaGCAG-GACAUCu -3'
miRNA:   3'- agugCGGUCCGCaaCGUCuCUGUGGu -5'
29981 5' -56.3 NC_006273.1 + 132128 0.68 0.874516
Target:  5'- --gUGCUGGGCGUguUGCAGAGuaucagcgguACGCCGc -3'
miRNA:   3'- aguGCGGUCCGCA--ACGUCUC----------UGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.