Results 41 - 60 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29981 | 5' | -56.3 | NC_006273.1 | + | 140776 | 0.66 | 0.94539 |
Target: 5'- cCGCGgCGGGUGgaccgggaagccgGCGGAGGuCGCCGg -3' miRNA: 3'- aGUGCgGUCCGCaa-----------CGUCUCU-GUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 182793 | 0.66 | 0.951613 |
Target: 5'- -gAgGCUcucaaaaAGGCccUGCGGAGGCACCGg -3' miRNA: 3'- agUgCGG-------UCCGcaACGUCUCUGUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 94718 | 0.66 | 0.952011 |
Target: 5'- gUCGuCGCCugcGGCGUUggcGCAGGGAauucguaGCCGc -3' miRNA: 3'- -AGU-GCGGu--CCGCAA---CGUCUCUg------UGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 73167 | 0.66 | 0.952011 |
Target: 5'- aCACGCagacGGCGgagGCGGuAGACGCg- -3' miRNA: 3'- aGUGCGgu--CCGCaa-CGUC-UCUGUGgu -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 205336 | 0.68 | 0.894804 |
Target: 5'- gCAgGCCAGGUGUUGCccguGGucuGGcCGCCGg -3' miRNA: 3'- aGUgCGGUCCGCAACG----UCu--CU-GUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 171046 | 0.68 | 0.892863 |
Target: 5'- --gUGUCGGGCGUcaUGCGGAGucgcggcgguugggGCGCCGa -3' miRNA: 3'- aguGCGGUCCGCA--ACGUCUC--------------UGUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 1170 | 0.73 | 0.630764 |
Target: 5'- -aGCGCCAGGCGcUGaCGGAGcuggaAUACCAg -3' miRNA: 3'- agUGCGGUCCGCaAC-GUCUC-----UGUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 170846 | 0.73 | 0.640763 |
Target: 5'- uUCAUgGCgAGGcCGgcgGCAGGGACACCGa -3' miRNA: 3'- -AGUG-CGgUCC-GCaa-CGUCUCUGUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 141174 | 0.7 | 0.776396 |
Target: 5'- -uGCGCCGGGgGgcgGCGGGcACGCCGg -3' miRNA: 3'- agUGCGGUCCgCaa-CGUCUcUGUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 10017 | 0.69 | 0.820206 |
Target: 5'- aCGuCGCCAGGUGaUGguGaAGAuCACCAa -3' miRNA: 3'- aGU-GCGGUCCGCaACguC-UCU-GUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 101166 | 0.69 | 0.820206 |
Target: 5'- cUCGgGCaCGGGCGUgGCGGccguAGGCGCCu -3' miRNA: 3'- -AGUgCG-GUCCGCAaCGUC----UCUGUGGu -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 140156 | 0.69 | 0.828509 |
Target: 5'- aCACGCCAcagccuGGUGggGUccGAGGCGCCGa -3' miRNA: 3'- aGUGCGGU------CCGCaaCGu-CUCUGUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 190473 | 0.69 | 0.8516 |
Target: 5'- gUUGCGCCGgacGGCGUUguggcgcGCAGGGGCuCCGa -3' miRNA: 3'- -AGUGCGGU---CCGCAA-------CGUCUCUGuGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 50704 | 0.69 | 0.852369 |
Target: 5'- gCACGCC-GGCGUUaggucgcuacucGCuGGGAgACCAg -3' miRNA: 3'- aGUGCGGuCCGCAA------------CGuCUCUgUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 26121 | 0.68 | 0.874516 |
Target: 5'- aCGcCGCCGGGCGcUGCGGucccGACAUgGa -3' miRNA: 3'- aGU-GCGGUCCGCaACGUCu---CUGUGgU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 159437 | 0.68 | 0.881492 |
Target: 5'- -gGCGCCgAGGCuuGUUGUA-AGGCACCGu -3' miRNA: 3'- agUGCGG-UCCG--CAACGUcUCUGUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 155161 | 0.68 | 0.887589 |
Target: 5'- cCGCGCCcagguAGGcCGUuacugucUGCAG-GACGCCGu -3' miRNA: 3'- aGUGCGG-----UCC-GCA-------ACGUCuCUGUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 14012 | 0.68 | 0.888256 |
Target: 5'- -gGCGCgGGGUGgcggaGCGGGGAgCGCCGa -3' miRNA: 3'- agUGCGgUCCGCaa---CGUCUCU-GUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 1993 | 0.68 | 0.888256 |
Target: 5'- gUCGCGCCAgcGGCGagcgGCacGGAGACggagGCCGc -3' miRNA: 3'- -AGUGCGGU--CCGCaa--CG--UCUCUG----UGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 6399 | 1.09 | 0.00378 |
Target: 5'- aUCACGCCAGGCGUUGCAGAGACACCAg -3' miRNA: 3'- -AGUGCGGUCCGCAACGUCUCUGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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