Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29981 | 5' | -56.3 | NC_006273.1 | + | 105843 | 0.67 | 0.907241 |
Target: 5'- gUCACaGCCgAGGCGgcGCGGcGcaGCGCCGg -3' miRNA: 3'- -AGUG-CGG-UCCGCaaCGUCuC--UGUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 171046 | 0.68 | 0.892863 |
Target: 5'- --gUGUCGGGCGUcaUGCGGAGucgcggcgguugggGCGCCGa -3' miRNA: 3'- aguGCGGUCCGCA--ACGUCUC--------------UGUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 94718 | 0.66 | 0.952011 |
Target: 5'- gUCGuCGCCugcGGCGUUggcGCAGGGAauucguaGCCGc -3' miRNA: 3'- -AGU-GCGGu--CCGCAA---CGUCUCUg------UGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 214147 | 0.66 | 0.934382 |
Target: 5'- cUCGCuCCAGGCGaucaGCAGcGGCAgCCAc -3' miRNA: 3'- -AGUGcGGUCCGCaa--CGUCuCUGU-GGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 1993 | 0.68 | 0.888256 |
Target: 5'- gUCGCGCCAgcGGCGagcgGCacGGAGACggagGCCGc -3' miRNA: 3'- -AGUGCGGU--CCGCaa--CG--UCUCUG----UGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 182793 | 0.66 | 0.951613 |
Target: 5'- -gAgGCUcucaaaaAGGCccUGCGGAGGCACCGg -3' miRNA: 3'- agUgCGG-------UCCGcaACGUCUCUGUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 14012 | 0.68 | 0.888256 |
Target: 5'- -gGCGCgGGGUGgcggaGCGGGGAgCGCCGa -3' miRNA: 3'- agUGCGgUCCGCaa---CGUCUCU-GUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 155161 | 0.68 | 0.887589 |
Target: 5'- cCGCGCCcagguAGGcCGUuacugucUGCAG-GACGCCGu -3' miRNA: 3'- aGUGCGG-----UCC-GCA-------ACGUCuCUGUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 205336 | 0.68 | 0.894804 |
Target: 5'- gCAgGCCAGGUGUUGCccguGGucuGGcCGCCGg -3' miRNA: 3'- aGUgCGGUCCGCAACG----UCu--CU-GUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 73167 | 0.66 | 0.952011 |
Target: 5'- aCACGCagacGGCGgagGCGGuAGACGCg- -3' miRNA: 3'- aGUGCGgu--CCGCaa-CGUC-UCUGUGgu -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 31840 | 0.66 | 0.947939 |
Target: 5'- aCGCGUCGuGCGUcaGCAG-GACGCCu -3' miRNA: 3'- aGUGCGGUcCGCAa-CGUCuCUGUGGu -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 52827 | 0.67 | 0.912545 |
Target: 5'- aUUACGCCAuguuggcGGCGUaaccggUGCcGAGaACGCCGg -3' miRNA: 3'- -AGUGCGGU-------CCGCA------ACGuCUC-UGUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 102991 | 0.67 | 0.907241 |
Target: 5'- gUCGCGCCAGac----CGGAGACGCCGu -3' miRNA: 3'- -AGUGCGGUCcgcaacGUCUCUGUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 133952 | 0.67 | 0.907241 |
Target: 5'- uUCugGUCGGGCGUgugGUAGaAGAgCACgCGg -3' miRNA: 3'- -AGugCGGUCCGCAa--CGUC-UCU-GUG-GU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 7681 | 0.68 | 0.874516 |
Target: 5'- aCAUGCCgaugguauGGGCGgcgGCGGcAGugGCCGc -3' miRNA: 3'- aGUGCGG--------UCCGCaa-CGUC-UCugUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 34007 | 0.66 | 0.937727 |
Target: 5'- cUCA-GCUcGGCGUgcuccaaacgggaaUGguGGGACGCCAc -3' miRNA: 3'- -AGUgCGGuCCGCA--------------ACguCUCUGUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 120001 | 0.66 | 0.938663 |
Target: 5'- -gGCGUCAGGCGUcgugggccaaaguUGUuGAGGucCACCAg -3' miRNA: 3'- agUGCGGUCCGCA-------------ACGuCUCU--GUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 30451 | 0.66 | 0.939127 |
Target: 5'- aCACGCC-GGCGgaugaggagGCGGAGgACAgCGu -3' miRNA: 3'- aGUGCGGuCCGCaa-------CGUCUC-UGUgGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 234315 | 0.66 | 0.943204 |
Target: 5'- -gGCGCCcGGCGgcccGCGGgguucuacccgguGGACGCCGu -3' miRNA: 3'- agUGCGGuCCGCaa--CGUC-------------UCUGUGGU- -5' |
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29981 | 5' | -56.3 | NC_006273.1 | + | 167180 | 0.66 | 0.943645 |
Target: 5'- cCACGgCGGGCGcaGCGGccgcGGAgGCCGg -3' miRNA: 3'- aGUGCgGUCCGCaaCGUC----UCUgUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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