miRNA display CGI


Results 41 - 60 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 5' -56.3 NC_006273.1 + 91288 0.69 0.828509
Target:  5'- ---aGCaCAGGCGUacgcaCAGAGACGCCGa -3'
miRNA:   3'- agugCG-GUCCGCAac---GUCUCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 189839 0.7 0.767232
Target:  5'- cCACGCCGGGUGgcaucUGCggcauggcggggGGAGACGCg- -3'
miRNA:   3'- aGUGCGGUCCGCa----ACG------------UCUCUGUGgu -5'
29981 5' -56.3 NC_006273.1 + 64253 0.71 0.710135
Target:  5'- gCGgGCaCGGGCGUUGCGGcGGCgGCCGa -3'
miRNA:   3'- aGUgCG-GUCCGCAACGUCuCUG-UGGU- -5'
29981 5' -56.3 NC_006273.1 + 102991 0.67 0.907241
Target:  5'- gUCGCGCCAGac----CGGAGACGCCGu -3'
miRNA:   3'- -AGUGCGGUCcgcaacGUCUCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 52827 0.67 0.912545
Target:  5'- aUUACGCCAuguuggcGGCGUaaccggUGCcGAGaACGCCGg -3'
miRNA:   3'- -AGUGCGGU-------CCGCA------ACGuCUC-UGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 164460 0.67 0.913124
Target:  5'- gUCGCGcCCAGGCGUccagGCAacccGAgGCCGg -3'
miRNA:   3'- -AGUGC-GGUCCGCAa---CGUcu--CUgUGGU- -5'
29981 5' -56.3 NC_006273.1 + 118283 0.66 0.952011
Target:  5'- gCGCGCuCAGGcCGgcgUGguGA-ACGCCAg -3'
miRNA:   3'- aGUGCG-GUCC-GCa--ACguCUcUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 167180 0.66 0.943645
Target:  5'- cCACGgCGGGCGcaGCGGccgcGGAgGCCGg -3'
miRNA:   3'- aGUGCgGUCCGCaaCGUC----UCUgUGGU- -5'
29981 5' -56.3 NC_006273.1 + 234315 0.66 0.943204
Target:  5'- -gGCGCCcGGCGgcccGCGGgguucuacccgguGGACGCCGu -3'
miRNA:   3'- agUGCGGuCCGCaa--CGUC-------------UCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 30451 0.66 0.939127
Target:  5'- aCACGCC-GGCGgaugaggagGCGGAGgACAgCGu -3'
miRNA:   3'- aGUGCGGuCCGCaa-------CGUCUC-UGUgGU- -5'
29981 5' -56.3 NC_006273.1 + 120001 0.66 0.938663
Target:  5'- -gGCGUCAGGCGUcgugggccaaaguUGUuGAGGucCACCAg -3'
miRNA:   3'- agUGCGGUCCGCA-------------ACGuCUCU--GUGGU- -5'
29981 5' -56.3 NC_006273.1 + 133465 0.66 0.934382
Target:  5'- aUCGCaGUCAcGGCGgcgUGCAGgcgcGGACGCUg -3'
miRNA:   3'- -AGUG-CGGU-CCGCa--ACGUC----UCUGUGGu -5'
29981 5' -56.3 NC_006273.1 + 134871 0.66 0.92941
Target:  5'- --cCGCCAGGUGagGCGG-GAuCGCCGu -3'
miRNA:   3'- aguGCGGUCCGCaaCGUCuCU-GUGGU- -5'
29981 5' -56.3 NC_006273.1 + 34007 0.66 0.937727
Target:  5'- cUCA-GCUcGGCGUgcuccaaacgggaaUGguGGGACGCCAc -3'
miRNA:   3'- -AGUgCGGuCCGCA--------------ACguCUCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 138028 0.66 0.92941
Target:  5'- -gACGCUAGGCGgcGCc--GGCGCCu -3'
miRNA:   3'- agUGCGGUCCGCaaCGucuCUGUGGu -5'
29981 5' -56.3 NC_006273.1 + 113731 0.67 0.924209
Target:  5'- -aGCGCCGgagguGGCGacgGCGGcGGCGCCGu -3'
miRNA:   3'- agUGCGGU-----CCGCaa-CGUCuCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 66835 0.67 0.924209
Target:  5'- -aGCGCUAGGCGgccUGCAGcuAC-CCGa -3'
miRNA:   3'- agUGCGGUCCGCa--ACGUCucUGuGGU- -5'
29981 5' -56.3 NC_006273.1 + 100279 0.67 0.91878
Target:  5'- aCGCGCgAcGGCGUaGC-GAGACgGCCAc -3'
miRNA:   3'- aGUGCGgU-CCGCAaCGuCUCUG-UGGU- -5'
29981 5' -56.3 NC_006273.1 + 129285 0.67 0.913124
Target:  5'- cCAUuCCAGGCGaUUGCAGaAGGUGCCGa -3'
miRNA:   3'- aGUGcGGUCCGC-AACGUC-UCUGUGGU- -5'
29981 5' -56.3 NC_006273.1 + 196063 0.73 0.630764
Target:  5'- -aGCGCCAGGCGcUGaCGGAGcuggaAUACCAg -3'
miRNA:   3'- agUGCGGUCCGCaAC-GUCUC-----UGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.