miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29982 3' -56 NC_006273.1 + 139861 0.66 0.965682
Target:  5'- -gGGUGGGACGgucguggucuccucgGCCcGUGCCGGG-ACc -3'
miRNA:   3'- cgCCGCUUUGU---------------UGGuCGCGGCCCaUG- -5'
29982 3' -56 NC_006273.1 + 68783 0.66 0.964415
Target:  5'- aGCGGCGGcGGCGAUggCGGgGCUGGuUGCu -3'
miRNA:   3'- -CGCCGCU-UUGUUG--GUCgCGGCCcAUG- -5'
29982 3' -56 NC_006273.1 + 45931 0.66 0.964415
Target:  5'- cCGaCGAGACuucgucgcgaGGCCGGCucCCGGGUGCu -3'
miRNA:   3'- cGCcGCUUUG----------UUGGUCGc-GGCCCAUG- -5'
29982 3' -56 NC_006273.1 + 86596 0.66 0.964415
Target:  5'- cGUGGCauuGAGAC-GCaCGGCGCCGccgccggccucGGUACc -3'
miRNA:   3'- -CGCCG---CUUUGuUG-GUCGCGGC-----------CCAUG- -5'
29982 3' -56 NC_006273.1 + 190030 0.66 0.964415
Target:  5'- uGCGGUGGGAUGACgGGCuGgUGGG-ACu -3'
miRNA:   3'- -CGCCGCUUUGUUGgUCG-CgGCCCaUG- -5'
29982 3' -56 NC_006273.1 + 124758 0.66 0.964415
Target:  5'- cGCuGGUu-GAUuuCCAGCGCCaguggcauGGGUACg -3'
miRNA:   3'- -CG-CCGcuUUGuuGGUCGCGG--------CCCAUG- -5'
29982 3' -56 NC_006273.1 + 230532 0.66 0.961107
Target:  5'- aCGGCGGGACuuAGCCGcccGUGgCCGGGa-- -3'
miRNA:   3'- cGCCGCUUUG--UUGGU---CGC-GGCCCaug -5'
29982 3' -56 NC_006273.1 + 68024 0.66 0.961107
Target:  5'- gGUGGCGGAggacugccgGCAggugugggcucgGCCAGCGCCGccGUGg -3'
miRNA:   3'- -CGCCGCUU---------UGU------------UGGUCGCGGCc-CAUg -5'
29982 3' -56 NC_006273.1 + 189477 0.66 0.961107
Target:  5'- uCGGaucgcuuGCGGCCucGGCGCUGGGUAa -3'
miRNA:   3'- cGCCgcuu---UGUUGG--UCGCGGCCCAUg -5'
29982 3' -56 NC_006273.1 + 161951 0.66 0.961107
Target:  5'- aCGGCGAGGCuucgGCUGGCGCCaagacgcagcaGGGc-- -3'
miRNA:   3'- cGCCGCUUUGu---UGGUCGCGG-----------CCCaug -5'
29982 3' -56 NC_006273.1 + 233525 0.66 0.961107
Target:  5'- aCGGCcguAGCAGCgA-CGCgGGGUGCg -3'
miRNA:   3'- cGCCGcu-UUGUUGgUcGCGgCCCAUG- -5'
29982 3' -56 NC_006273.1 + 20371 0.66 0.961107
Target:  5'- cCGGCGGAccGCGAcCCGGCGgugCGGG-ACu -3'
miRNA:   3'- cGCCGCUU--UGUU-GGUCGCg--GCCCaUG- -5'
29982 3' -56 NC_006273.1 + 218724 0.66 0.961107
Target:  5'- cGCGGUaGGAGCccaCGGCGCCcagcaGGUACc -3'
miRNA:   3'- -CGCCG-CUUUGuugGUCGCGGc----CCAUG- -5'
29982 3' -56 NC_006273.1 + 75456 0.66 0.961107
Target:  5'- uGCGGCGGA---GCCGuCGCCGGcaGUAg -3'
miRNA:   3'- -CGCCGCUUuguUGGUcGCGGCC--CAUg -5'
29982 3' -56 NC_006273.1 + 149599 0.66 0.961107
Target:  5'- gGCGGCGGucuagauGCCGcUGCCGGGa-- -3'
miRNA:   3'- -CGCCGCUuugu---UGGUcGCGGCCCaug -5'
29982 3' -56 NC_006273.1 + 114084 0.66 0.961107
Target:  5'- uCGGCGAGAgCGGgCGGCGguggUGGGUAUg -3'
miRNA:   3'- cGCCGCUUU-GUUgGUCGCg---GCCCAUG- -5'
29982 3' -56 NC_006273.1 + 40488 0.66 0.961107
Target:  5'- cGUGGuCGAGGCGGcCCGGCugcuGCCGGacagGCg -3'
miRNA:   3'- -CGCC-GCUUUGUU-GGUCG----CGGCCca--UG- -5'
29982 3' -56 NC_006273.1 + 120523 0.66 0.960765
Target:  5'- cGCGGCGGGuggcuCAACCucggugcuuuuugGGCGUCGaGGcgaUGCa -3'
miRNA:   3'- -CGCCGCUUu----GUUGG-------------UCGCGGC-CC---AUG- -5'
29982 3' -56 NC_006273.1 + 144405 0.66 0.959726
Target:  5'- aGCGGCugucugcCCGGCGCCGcGGcgGCg -3'
miRNA:   3'- -CGCCGcuuuguuGGUCGCGGC-CCa-UG- -5'
29982 3' -56 NC_006273.1 + 162370 0.66 0.957592
Target:  5'- gGCGGCGGcgcuagugguGGCGguGgCGGCGgCGGGaGCg -3'
miRNA:   3'- -CGCCGCU----------UUGU--UgGUCGCgGCCCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.