miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29983 3' -56 NC_006273.1 + 33403 0.66 0.951472
Target:  5'- gGCGCUGGac-GCGCACCGCcUCGg- -3'
miRNA:   3'- aUGUGGCUgucCGUGUGGCGuAGCau -5'
29983 3' -56 NC_006273.1 + 202692 0.66 0.951472
Target:  5'- cGCGCUGcGCAgGGCAgACUGCGUCa-- -3'
miRNA:   3'- aUGUGGC-UGU-CCGUgUGGCGUAGcau -5'
29983 3' -56 NC_006273.1 + 175099 0.66 0.951068
Target:  5'- ---cCCGAC-GGCACGCCGUcugugcuGUCGUu -3'
miRNA:   3'- auguGGCUGuCCGUGUGGCG-------UAGCAu -5'
29983 3' -56 NC_006273.1 + 189309 0.66 0.947331
Target:  5'- gUACACCG-C-GGCACcuGCgGCGUCGg- -3'
miRNA:   3'- -AUGUGGCuGuCCGUG--UGgCGUAGCau -5'
29983 3' -56 NC_006273.1 + 79339 0.66 0.947331
Target:  5'- gGCGgCGAUGGGCagACACgGCAUCa-- -3'
miRNA:   3'- aUGUgGCUGUCCG--UGUGgCGUAGcau -5'
29983 3' -56 NC_006273.1 + 104398 0.66 0.947331
Target:  5'- gGCGaaGACGGGCGCcacCCGCcgCGa- -3'
miRNA:   3'- aUGUggCUGUCCGUGu--GGCGuaGCau -5'
29983 3' -56 NC_006273.1 + 197378 0.66 0.947331
Target:  5'- cUGCACCuGCAcccGCGCGCCGCGcUGUGg -3'
miRNA:   3'- -AUGUGGcUGUc--CGUGUGGCGUaGCAU- -5'
29983 3' -56 NC_006273.1 + 119778 0.66 0.947331
Target:  5'- -uCGCCGGCAcgcugucccGGCAC-CCGCAcCGUc -3'
miRNA:   3'- auGUGGCUGU---------CCGUGuGGCGUaGCAu -5'
29983 3' -56 NC_006273.1 + 2485 0.66 0.947331
Target:  5'- cUGCACCuGCAcccGCGCGCCGCGcUGUGg -3'
miRNA:   3'- -AUGUGGcUGUc--CGUGUGGCGUaGCAU- -5'
29983 3' -56 NC_006273.1 + 7571 0.66 0.942963
Target:  5'- aACAUCGACGGuGCAC-CCGUuacUCGg- -3'
miRNA:   3'- aUGUGGCUGUC-CGUGuGGCGu--AGCau -5'
29983 3' -56 NC_006273.1 + 98121 0.66 0.942963
Target:  5'- ---uUCGGCGGGCGgACCGCucUCGUu -3'
miRNA:   3'- auguGGCUGUCCGUgUGGCGu-AGCAu -5'
29983 3' -56 NC_006273.1 + 154056 0.66 0.942963
Target:  5'- gACACCGAUAGGCugcgugagguCAUUGCcagCGUGg -3'
miRNA:   3'- aUGUGGCUGUCCGu---------GUGGCGua-GCAU- -5'
29983 3' -56 NC_006273.1 + 49479 0.66 0.942963
Target:  5'- --gGCCGACAGGCucuccacguCGCCGCG--GUAg -3'
miRNA:   3'- augUGGCUGUCCGu--------GUGGCGUagCAU- -5'
29983 3' -56 NC_006273.1 + 198756 0.66 0.938366
Target:  5'- uUGCGCCuACguagAGGCGCACCGCGaggCGc- -3'
miRNA:   3'- -AUGUGGcUG----UCCGUGUGGCGUa--GCau -5'
29983 3' -56 NC_006273.1 + 166666 0.66 0.938366
Target:  5'- gACAgCGGCAaguGGgGCGCCGCgAUCGa- -3'
miRNA:   3'- aUGUgGCUGU---CCgUGUGGCG-UAGCau -5'
29983 3' -56 NC_006273.1 + 102839 0.66 0.938366
Target:  5'- cGCGCCGGCcgcguccacGGGCACGCUGUuggGUGg -3'
miRNA:   3'- aUGUGGCUG---------UCCGUGUGGCGuagCAU- -5'
29983 3' -56 NC_006273.1 + 221817 0.66 0.936942
Target:  5'- cGC-CCGGCGGGUgagcacccggcguuGCGCCGUAUCu-- -3'
miRNA:   3'- aUGuGGCUGUCCG--------------UGUGGCGUAGcau -5'
29983 3' -56 NC_006273.1 + 233455 0.66 0.933538
Target:  5'- -cCACCGcGCGGGCAgCACCGCGc---- -3'
miRNA:   3'- auGUGGC-UGUCCGU-GUGGCGUagcau -5'
29983 3' -56 NC_006273.1 + 187998 0.66 0.933538
Target:  5'- aGCACCuccGCcGGCA-ACCGCGUCGUc -3'
miRNA:   3'- aUGUGGc--UGuCCGUgUGGCGUAGCAu -5'
29983 3' -56 NC_006273.1 + 38562 0.66 0.933538
Target:  5'- -cCACCGcGCGGGCAgCACCGCGc---- -3'
miRNA:   3'- auGUGGC-UGUCCGU-GUGGCGUagcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.