Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29983 | 3' | -56 | NC_006273.1 | + | 166666 | 0.66 | 0.938366 |
Target: 5'- gACAgCGGCAaguGGgGCGCCGCgAUCGa- -3' miRNA: 3'- aUGUgGCUGU---CCgUGUGGCG-UAGCau -5' |
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29983 | 3' | -56 | NC_006273.1 | + | 233455 | 0.66 | 0.933538 |
Target: 5'- -cCACCGcGCGGGCAgCACCGCGc---- -3' miRNA: 3'- auGUGGC-UGUCCGU-GUGGCGUagcau -5' |
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29983 | 3' | -56 | NC_006273.1 | + | 221817 | 0.66 | 0.936942 |
Target: 5'- cGC-CCGGCGGGUgagcacccggcguuGCGCCGUAUCu-- -3' miRNA: 3'- aUGuGGCUGUCCG--------------UGUGGCGUAGcau -5' |
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29983 | 3' | -56 | NC_006273.1 | + | 33403 | 0.66 | 0.951472 |
Target: 5'- gGCGCUGGac-GCGCACCGCcUCGg- -3' miRNA: 3'- aUGUGGCUgucCGUGUGGCGuAGCau -5' |
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29983 | 3' | -56 | NC_006273.1 | + | 102839 | 0.66 | 0.938366 |
Target: 5'- cGCGCCGGCcgcguccacGGGCACGCUGUuggGUGg -3' miRNA: 3'- aUGUGGCUG---------UCCGUGUGGCGuagCAU- -5' |
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29983 | 3' | -56 | NC_006273.1 | + | 49479 | 0.66 | 0.942963 |
Target: 5'- --gGCCGACAGGCucuccacguCGCCGCG--GUAg -3' miRNA: 3'- augUGGCUGUCCGu--------GUGGCGUagCAU- -5' |
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29983 | 3' | -56 | NC_006273.1 | + | 104398 | 0.66 | 0.947331 |
Target: 5'- gGCGaaGACGGGCGCcacCCGCcgCGa- -3' miRNA: 3'- aUGUggCUGUCCGUGu--GGCGuaGCau -5' |
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29983 | 3' | -56 | NC_006273.1 | + | 79339 | 0.66 | 0.947331 |
Target: 5'- gGCGgCGAUGGGCagACACgGCAUCa-- -3' miRNA: 3'- aUGUgGCUGUCCG--UGUGgCGUAGcau -5' |
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29983 | 3' | -56 | NC_006273.1 | + | 189309 | 0.66 | 0.947331 |
Target: 5'- gUACACCG-C-GGCACcuGCgGCGUCGg- -3' miRNA: 3'- -AUGUGGCuGuCCGUG--UGgCGUAGCau -5' |
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29983 | 3' | -56 | NC_006273.1 | + | 187998 | 0.66 | 0.933538 |
Target: 5'- aGCACCuccGCcGGCA-ACCGCGUCGUc -3' miRNA: 3'- aUGUGGc--UGuCCGUgUGGCGUAGCAu -5' |
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29983 | 3' | -56 | NC_006273.1 | + | 107005 | 0.66 | 0.933538 |
Target: 5'- aUACGUCGACugcuaGCACACCGCGUCc-- -3' miRNA: 3'- -AUGUGGCUGuc---CGUGUGGCGUAGcau -5' |
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29983 | 3' | -56 | NC_006273.1 | + | 90930 | 0.66 | 0.933538 |
Target: 5'- gUACAaCGGCAcGCGCACCGCcUCGc- -3' miRNA: 3'- -AUGUgGCUGUcCGUGUGGCGuAGCau -5' |
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29983 | 3' | -56 | NC_006273.1 | + | 18877 | 0.66 | 0.933538 |
Target: 5'- cUGCGCUGGCAcGGCGCACUGggcacCAUCa-- -3' miRNA: 3'- -AUGUGGCUGU-CCGUGUGGC-----GUAGcau -5' |
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29983 | 3' | -56 | NC_006273.1 | + | 68034 | 0.66 | 0.927959 |
Target: 5'- gACuGCCGGCAGGUgugggcucggccaGCGCCGCcgUGg- -3' miRNA: 3'- aUG-UGGCUGUCCG-------------UGUGGCGuaGCau -5' |
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29983 | 3' | -56 | NC_006273.1 | + | 165822 | 0.66 | 0.928478 |
Target: 5'- aUGCugCGugAGGUAgGgCCGUagGUCGUAc -3' miRNA: 3'- -AUGugGCugUCCGUgU-GGCG--UAGCAU- -5' |
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29983 | 3' | -56 | NC_006273.1 | + | 38562 | 0.66 | 0.933538 |
Target: 5'- -cCACCGcGCGGGCAgCACCGCGc---- -3' miRNA: 3'- auGUGGC-UGUCCGU-GUGGCGUagcau -5' |
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29983 | 3' | -56 | NC_006273.1 | + | 198756 | 0.66 | 0.938366 |
Target: 5'- uUGCGCCuACguagAGGCGCACCGCGaggCGc- -3' miRNA: 3'- -AUGUGGcUG----UCCGUGUGGCGUa--GCau -5' |
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29983 | 3' | -56 | NC_006273.1 | + | 122710 | 0.66 | 0.928478 |
Target: 5'- --uGCUGACAGGCA-ACCGCGauucagCGUAu -3' miRNA: 3'- augUGGCUGUCCGUgUGGCGUa-----GCAU- -5' |
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29983 | 3' | -56 | NC_006273.1 | + | 202692 | 0.66 | 0.951472 |
Target: 5'- cGCGCUGcGCAgGGCAgACUGCGUCa-- -3' miRNA: 3'- aUGUGGC-UGU-CCGUgUGGCGUAGcau -5' |
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29983 | 3' | -56 | NC_006273.1 | + | 124393 | 0.66 | 0.928478 |
Target: 5'- aGCGCCGACAGccGCGCGaucUCGuCGUCGg- -3' miRNA: 3'- aUGUGGCUGUC--CGUGU---GGC-GUAGCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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