miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29983 3' -56 NC_006273.1 + 3345 1.05 0.006824
Target:  5'- uUACACCGACAGGCACACCGCAUCGUAa -3'
miRNA:   3'- -AUGUGGCUGUCCGUGUGGCGUAGCAU- -5'
29983 3' -56 NC_006273.1 + 163734 0.77 0.415611
Target:  5'- aACAgCCGGC-GGCAgGCCGCAUCGUc -3'
miRNA:   3'- aUGU-GGCUGuCCGUgUGGCGUAGCAu -5'
29983 3' -56 NC_006273.1 + 213122 0.76 0.47844
Target:  5'- cGCACCGAC-GGCGgaGCCGCGUCGc- -3'
miRNA:   3'- aUGUGGCUGuCCGUg-UGGCGUAGCau -5'
29983 3' -56 NC_006273.1 + 63822 0.73 0.615485
Target:  5'- -cCACCGGCAgcGGCACGCCGCga-GUGa -3'
miRNA:   3'- auGUGGCUGU--CCGUGUGGCGuagCAU- -5'
29983 3' -56 NC_006273.1 + 147536 0.73 0.624564
Target:  5'- aACGCCGGCgaagacgAGGCugGCgGCGUCGg- -3'
miRNA:   3'- aUGUGGCUG-------UCCGugUGgCGUAGCau -5'
29983 3' -56 NC_006273.1 + 115352 0.73 0.625573
Target:  5'- cUGCACCGACGGcGaaaACACCGUcgCGUc -3'
miRNA:   3'- -AUGUGGCUGUC-Cg--UGUGGCGuaGCAu -5'
29983 3' -56 NC_006273.1 + 150658 0.72 0.665898
Target:  5'- aGCugCaGGCAGGUAUGCCGCGUCu-- -3'
miRNA:   3'- aUGugG-CUGUCCGUGUGGCGUAGcau -5'
29983 3' -56 NC_006273.1 + 116123 0.72 0.685933
Target:  5'- aACACCGACAGcCGCuagGCCGCAUCc-- -3'
miRNA:   3'- aUGUGGCUGUCcGUG---UGGCGUAGcau -5'
29983 3' -56 NC_006273.1 + 77307 0.72 0.685933
Target:  5'- cGCACCGGCA-GCACACCuGCcUCGa- -3'
miRNA:   3'- aUGUGGCUGUcCGUGUGG-CGuAGCau -5'
29983 3' -56 NC_006273.1 + 131070 0.72 0.69589
Target:  5'- cUGCGCCGGgccuauCAGGaACACCGaCGUCGUAa -3'
miRNA:   3'- -AUGUGGCU------GUCCgUGUGGC-GUAGCAU- -5'
29983 3' -56 NC_006273.1 + 106543 0.71 0.705795
Target:  5'- gGCG-CGACAGGCGCugaACCGCAUCc-- -3'
miRNA:   3'- aUGUgGCUGUCCGUG---UGGCGUAGcau -5'
29983 3' -56 NC_006273.1 + 143155 0.71 0.725414
Target:  5'- gAgACgGGCAcGGCGCGCCGCAUCc-- -3'
miRNA:   3'- aUgUGgCUGU-CCGUGUGGCGUAGcau -5'
29983 3' -56 NC_006273.1 + 164896 0.71 0.74472
Target:  5'- --aGCCGGCAGGUugACgCGCGUCu-- -3'
miRNA:   3'- augUGGCUGUCCGugUG-GCGUAGcau -5'
29983 3' -56 NC_006273.1 + 148918 0.71 0.74472
Target:  5'- aGCACCGGCGGuGCGCACCcGCcgagCGa- -3'
miRNA:   3'- aUGUGGCUGUC-CGUGUGG-CGua--GCau -5'
29983 3' -56 NC_006273.1 + 197631 0.71 0.74472
Target:  5'- cGCGCCGACAGcuGCagcacguggagACGCUGCGUCGg- -3'
miRNA:   3'- aUGUGGCUGUC--CG-----------UGUGGCGUAGCau -5'
29983 3' -56 NC_006273.1 + 158217 0.71 0.754234
Target:  5'- gUGCAgCGugAGGCGCggGCgCGCGUCGg- -3'
miRNA:   3'- -AUGUgGCugUCCGUG--UG-GCGUAGCau -5'
29983 3' -56 NC_006273.1 + 46613 0.7 0.763643
Target:  5'- cACGCCGACGGaGCcgaccACGCUGCcuAUCGUGu -3'
miRNA:   3'- aUGUGGCUGUC-CG-----UGUGGCG--UAGCAU- -5'
29983 3' -56 NC_006273.1 + 43579 0.7 0.782112
Target:  5'- aGCGCCG-UAGGCAaguGCCGCGgcgCGUGu -3'
miRNA:   3'- aUGUGGCuGUCCGUg--UGGCGUa--GCAU- -5'
29983 3' -56 NC_006273.1 + 69656 0.7 0.782112
Target:  5'- aGCACCGcCuGGCAcCAgCGCAUCGa- -3'
miRNA:   3'- aUGUGGCuGuCCGU-GUgGCGUAGCau -5'
29983 3' -56 NC_006273.1 + 141173 0.7 0.799174
Target:  5'- cUGCGCCGgggggcgGCGGGCACGCCGgGUUu-- -3'
miRNA:   3'- -AUGUGGC-------UGUCCGUGUGGCgUAGcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.