miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29983 3' -56 NC_006273.1 + 233455 0.66 0.933538
Target:  5'- -cCACCGcGCGGGCAgCACCGCGc---- -3'
miRNA:   3'- auGUGGC-UGUCCGU-GUGGCGUagcau -5'
29983 3' -56 NC_006273.1 + 38562 0.66 0.933538
Target:  5'- -cCACCGcGCGGGCAgCACCGCGc---- -3'
miRNA:   3'- auGUGGC-UGUCCGU-GUGGCGUagcau -5'
29983 3' -56 NC_006273.1 + 18877 0.66 0.933538
Target:  5'- cUGCGCUGGCAcGGCGCACUGggcacCAUCa-- -3'
miRNA:   3'- -AUGUGGCUGU-CCGUGUGGC-----GUAGcau -5'
29983 3' -56 NC_006273.1 + 165822 0.66 0.928478
Target:  5'- aUGCugCGugAGGUAgGgCCGUagGUCGUAc -3'
miRNA:   3'- -AUGugGCugUCCGUgU-GGCG--UAGCAU- -5'
29983 3' -56 NC_006273.1 + 124393 0.66 0.928478
Target:  5'- aGCGCCGACAGccGCGCGaucUCGuCGUCGg- -3'
miRNA:   3'- aUGUGGCUGUC--CGUGU---GGC-GUAGCau -5'
29983 3' -56 NC_006273.1 + 122710 0.66 0.928478
Target:  5'- --uGCUGACAGGCA-ACCGCGauucagCGUAu -3'
miRNA:   3'- augUGGCUGUCCGUgUGGCGUa-----GCAU- -5'
29983 3' -56 NC_006273.1 + 68034 0.66 0.927959
Target:  5'- gACuGCCGGCAGGUgugggcucggccaGCGCCGCcgUGg- -3'
miRNA:   3'- aUG-UGGCUGUCCG-------------UGUGGCGuaGCau -5'
29983 3' -56 NC_006273.1 + 113135 0.67 0.923186
Target:  5'- gGCGgCGGCcgcagaGGGCGCGCCGCucaGUCGc- -3'
miRNA:   3'- aUGUgGCUG------UCCGUGUGGCG---UAGCau -5'
29983 3' -56 NC_006273.1 + 60038 0.67 0.917661
Target:  5'- cGCGCCGGCuccuGUACGCCGCAaaagCGa- -3'
miRNA:   3'- aUGUGGCUGuc--CGUGUGGCGUa---GCau -5'
29983 3' -56 NC_006273.1 + 131858 0.67 0.917661
Target:  5'- --gGCCGGCuacGGCG-GCCGCAUCGa- -3'
miRNA:   3'- augUGGCUGu--CCGUgUGGCGUAGCau -5'
29983 3' -56 NC_006273.1 + 123805 0.67 0.917661
Target:  5'- uUACGCaCGugAGGCAaucuCCGCAgagCGUu -3'
miRNA:   3'- -AUGUG-GCugUCCGUgu--GGCGUa--GCAu -5'
29983 3' -56 NC_006273.1 + 96561 0.67 0.911904
Target:  5'- aGCAUCGGCuacguGGCGCACCaaaaGCA-CGUGu -3'
miRNA:   3'- aUGUGGCUGu----CCGUGUGG----CGUaGCAU- -5'
29983 3' -56 NC_006273.1 + 164432 0.67 0.905918
Target:  5'- aACACgGuauugaGCAGcaGCACGCCGCGUCGc- -3'
miRNA:   3'- aUGUGgC------UGUC--CGUGUGGCGUAGCau -5'
29983 3' -56 NC_006273.1 + 42936 0.67 0.905918
Target:  5'- gGCAUCGugGcGCACGuCCGUAUCGa- -3'
miRNA:   3'- aUGUGGCugUcCGUGU-GGCGUAGCau -5'
29983 3' -56 NC_006273.1 + 20947 0.67 0.905918
Target:  5'- aUACGCUGAcCGGGCcuguccgccccGCGaacccCCGCAUCGUGc -3'
miRNA:   3'- -AUGUGGCU-GUCCG-----------UGU-----GGCGUAGCAU- -5'
29983 3' -56 NC_006273.1 + 125979 0.67 0.899703
Target:  5'- gUGCACCGugGcggcGGCAUugCGC-UCGg- -3'
miRNA:   3'- -AUGUGGCugU----CCGUGugGCGuAGCau -5'
29983 3' -56 NC_006273.1 + 38534 0.67 0.899703
Target:  5'- gACGaggaCGACGGGCAcCACCGCgGUCa-- -3'
miRNA:   3'- aUGUg---GCUGUCCGU-GUGGCG-UAGcau -5'
29983 3' -56 NC_006273.1 + 122826 0.67 0.899703
Target:  5'- aGCACCGGCGGcCGCugacgcggcgACCGCGUCa-- -3'
miRNA:   3'- aUGUGGCUGUCcGUG----------UGGCGUAGcau -5'
29983 3' -56 NC_006273.1 + 202021 0.67 0.899703
Target:  5'- cGCugCGACacgGGGaCGCGCCGCAggaUCGc- -3'
miRNA:   3'- aUGugGCUG---UCC-GUGUGGCGU---AGCau -5'
29983 3' -56 NC_006273.1 + 227781 0.68 0.895865
Target:  5'- -uCGCCGGCcuccaggaggagauGGCGCugUGCGUCGUc -3'
miRNA:   3'- auGUGGCUGu-------------CCGUGugGCGUAGCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.