miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29983 3' -56 NC_006273.1 + 2485 0.66 0.947331
Target:  5'- cUGCACCuGCAcccGCGCGCCGCGcUGUGg -3'
miRNA:   3'- -AUGUGGcUGUc--CGUGUGGCGUaGCAU- -5'
29983 3' -56 NC_006273.1 + 3345 1.05 0.006824
Target:  5'- uUACACCGACAGGCACACCGCAUCGUAa -3'
miRNA:   3'- -AUGUGGCUGUCCGUGUGGCGUAGCAU- -5'
29983 3' -56 NC_006273.1 + 7571 0.66 0.942963
Target:  5'- aACAUCGACGGuGCAC-CCGUuacUCGg- -3'
miRNA:   3'- aUGUGGCUGUC-CGUGuGGCGu--AGCau -5'
29983 3' -56 NC_006273.1 + 16456 0.69 0.850099
Target:  5'- gACACCGACGcGUugGCCGCcugCGUu -3'
miRNA:   3'- aUGUGGCUGUcCGugUGGCGua-GCAu -5'
29983 3' -56 NC_006273.1 + 18877 0.66 0.933538
Target:  5'- cUGCGCUGGCAcGGCGCACUGggcacCAUCa-- -3'
miRNA:   3'- -AUGUGGCUGU-CCGUGUGGC-----GUAGcau -5'
29983 3' -56 NC_006273.1 + 20947 0.67 0.905918
Target:  5'- aUACGCUGAcCGGGCcuguccgccccGCGaacccCCGCAUCGUGc -3'
miRNA:   3'- -AUGUGGCU-GUCCG-----------UGU-----GGCGUAGCAU- -5'
29983 3' -56 NC_006273.1 + 33403 0.66 0.951472
Target:  5'- gGCGCUGGac-GCGCACCGCcUCGg- -3'
miRNA:   3'- aUGUGGCUgucCGUGUGGCGuAGCau -5'
29983 3' -56 NC_006273.1 + 37417 0.68 0.886599
Target:  5'- aGCGCCG--GGGCGCGCCGCuacUUGg- -3'
miRNA:   3'- aUGUGGCugUCCGUGUGGCGu--AGCau -5'
29983 3' -56 NC_006273.1 + 38534 0.67 0.899703
Target:  5'- gACGaggaCGACGGGCAcCACCGCgGUCa-- -3'
miRNA:   3'- aUGUg---GCUGUCCGU-GUGGCG-UAGcau -5'
29983 3' -56 NC_006273.1 + 38562 0.66 0.933538
Target:  5'- -cCACCGcGCGGGCAgCACCGCGc---- -3'
miRNA:   3'- auGUGGC-UGUCCGU-GUGGCGUagcau -5'
29983 3' -56 NC_006273.1 + 42936 0.67 0.905918
Target:  5'- gGCAUCGugGcGCACGuCCGUAUCGa- -3'
miRNA:   3'- aUGUGGCugUcCGUGU-GGCGUAGCau -5'
29983 3' -56 NC_006273.1 + 43153 0.7 0.808813
Target:  5'- gUACGCCGguGCAGGCGuuuuuCGCCGCAUUu-- -3'
miRNA:   3'- -AUGUGGC--UGUCCGU-----GUGGCGUAGcau -5'
29983 3' -56 NC_006273.1 + 43579 0.7 0.782112
Target:  5'- aGCGCCG-UAGGCAaguGCCGCGgcgCGUGu -3'
miRNA:   3'- aUGUGGCuGUCCGUg--UGGCGUa--GCAU- -5'
29983 3' -56 NC_006273.1 + 46613 0.7 0.763643
Target:  5'- cACGCCGACGGaGCcgaccACGCUGCcuAUCGUGu -3'
miRNA:   3'- aUGUGGCUGUC-CG-----UGUGGCG--UAGCAU- -5'
29983 3' -56 NC_006273.1 + 49479 0.66 0.942963
Target:  5'- --gGCCGACAGGCucuccacguCGCCGCG--GUAg -3'
miRNA:   3'- augUGGCUGUCCGu--------GUGGCGUagCAU- -5'
29983 3' -56 NC_006273.1 + 55461 0.7 0.808813
Target:  5'- gGCGgUGGCcGGCACGCCGCAUUu-- -3'
miRNA:   3'- aUGUgGCUGuCCGUGUGGCGUAGcau -5'
29983 3' -56 NC_006273.1 + 60038 0.67 0.917661
Target:  5'- cGCGCCGGCuccuGUACGCCGCAaaagCGa- -3'
miRNA:   3'- aUGUGGCUGuc--CGUGUGGCGUa---GCau -5'
29983 3' -56 NC_006273.1 + 63822 0.73 0.615485
Target:  5'- -cCACCGGCAgcGGCACGCCGCga-GUGa -3'
miRNA:   3'- auGUGGCUGU--CCGUGUGGCGuagCAU- -5'
29983 3' -56 NC_006273.1 + 68034 0.66 0.927959
Target:  5'- gACuGCCGGCAGGUgugggcucggccaGCGCCGCcgUGg- -3'
miRNA:   3'- aUG-UGGCUGUCCG-------------UGUGGCGuaGCau -5'
29983 3' -56 NC_006273.1 + 69656 0.7 0.782112
Target:  5'- aGCACCGcCuGGCAcCAgCGCAUCGa- -3'
miRNA:   3'- aUGUGGCuGuCCGU-GUgGCGUAGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.