miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29983 3' -56 NC_006273.1 + 37417 0.68 0.886599
Target:  5'- aGCGCCG--GGGCGCGCCGCuacUUGg- -3'
miRNA:   3'- aUGUGGCugUCCGUGUGGCGu--AGCau -5'
29983 3' -56 NC_006273.1 + 137299 0.69 0.834113
Target:  5'- gUACGCUGACGuGGUGCGCUGCGuUCGc- -3'
miRNA:   3'- -AUGUGGCUGU-CCGUGUGGCGU-AGCau -5'
29983 3' -56 NC_006273.1 + 128114 0.69 0.850099
Target:  5'- aGCACCGGguGGCACAgCGUcUUGa- -3'
miRNA:   3'- aUGUGGCUguCCGUGUgGCGuAGCau -5'
29983 3' -56 NC_006273.1 + 111790 0.68 0.857807
Target:  5'- -cCGCCGGacucuGGGuCACGCgGCAUCGUGu -3'
miRNA:   3'- auGUGGCUg----UCC-GUGUGgCGUAGCAU- -5'
29983 3' -56 NC_006273.1 + 194814 0.68 0.865317
Target:  5'- cGCACCGGCAGcGCGCAgaaaGCGcCGUGg -3'
miRNA:   3'- aUGUGGCUGUC-CGUGUgg--CGUaGCAU- -5'
29983 3' -56 NC_006273.1 + 143413 0.68 0.872622
Target:  5'- cACGCCGGCGcGGCcUGCCGCG-CGUu -3'
miRNA:   3'- aUGUGGCUGU-CCGuGUGGCGUaGCAu -5'
29983 3' -56 NC_006273.1 + 196599 0.68 0.879718
Target:  5'- cGCGCCGAgAGGCgACGgCGC-UCGg- -3'
miRNA:   3'- aUGUGGCUgUCCG-UGUgGCGuAGCau -5'
29983 3' -56 NC_006273.1 + 216867 0.68 0.879718
Target:  5'- aAgGCCGGCAGGCGCGCagGCccUCGa- -3'
miRNA:   3'- aUgUGGCUGUCCGUGUGg-CGu-AGCau -5'
29983 3' -56 NC_006273.1 + 193823 0.68 0.886599
Target:  5'- gGCGgCGACAGcGCAUGCUGUggCGUAu -3'
miRNA:   3'- aUGUgGCUGUC-CGUGUGGCGuaGCAU- -5'
29983 3' -56 NC_006273.1 + 176154 0.69 0.825848
Target:  5'- gGCGCCcaGCAGGUACugCGCcuuGUCGUu -3'
miRNA:   3'- aUGUGGc-UGUCCGUGugGCG---UAGCAu -5'
29983 3' -56 NC_006273.1 + 88006 0.7 0.808813
Target:  5'- aGCGCCGACAGGUcguGCACCucccccccggcgGCGUcCGUu -3'
miRNA:   3'- aUGUGGCUGUCCG---UGUGG------------CGUA-GCAu -5'
29983 3' -56 NC_006273.1 + 43153 0.7 0.808813
Target:  5'- gUACGCCGguGCAGGCGuuuuuCGCCGCAUUu-- -3'
miRNA:   3'- -AUGUGGC--UGUCCGU-----GUGGCGUAGcau -5'
29983 3' -56 NC_006273.1 + 115352 0.73 0.625573
Target:  5'- cUGCACCGACGGcGaaaACACCGUcgCGUc -3'
miRNA:   3'- -AUGUGGCUGUC-Cg--UGUGGCGuaGCAu -5'
29983 3' -56 NC_006273.1 + 150658 0.72 0.665898
Target:  5'- aGCugCaGGCAGGUAUGCCGCGUCu-- -3'
miRNA:   3'- aUGugG-CUGUCCGUGUGGCGUAGcau -5'
29983 3' -56 NC_006273.1 + 77307 0.72 0.685933
Target:  5'- cGCACCGGCA-GCACACCuGCcUCGa- -3'
miRNA:   3'- aUGUGGCUGUcCGUGUGG-CGuAGCau -5'
29983 3' -56 NC_006273.1 + 131070 0.72 0.69589
Target:  5'- cUGCGCCGGgccuauCAGGaACACCGaCGUCGUAa -3'
miRNA:   3'- -AUGUGGCU------GUCCgUGUGGC-GUAGCAU- -5'
29983 3' -56 NC_006273.1 + 143155 0.71 0.725414
Target:  5'- gAgACgGGCAcGGCGCGCCGCAUCc-- -3'
miRNA:   3'- aUgUGgCUGU-CCGUGUGGCGUAGcau -5'
29983 3' -56 NC_006273.1 + 148918 0.71 0.74472
Target:  5'- aGCACCGGCGGuGCGCACCcGCcgagCGa- -3'
miRNA:   3'- aUGUGGCUGUC-CGUGUGG-CGua--GCau -5'
29983 3' -56 NC_006273.1 + 164896 0.71 0.74472
Target:  5'- --aGCCGGCAGGUugACgCGCGUCu-- -3'
miRNA:   3'- augUGGCUGUCCGugUG-GCGUAGcau -5'
29983 3' -56 NC_006273.1 + 69656 0.7 0.782112
Target:  5'- aGCACCGcCuGGCAcCAgCGCAUCGa- -3'
miRNA:   3'- aUGUGGCuGuCCGU-GUgGCGUAGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.