miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29983 5' -54.7 NC_006273.1 + 47383 0.66 0.967259
Target:  5'- cAACgACgACGCGGUuGCCggcggagGUGCUGg- -3'
miRNA:   3'- -UUG-UGgUGCGCCAuCGGa------CAUGACau -5'
29983 5' -54.7 NC_006273.1 + 2139 0.66 0.964032
Target:  5'- gGACGCgCACGCGGUGGUCgggGCg--- -3'
miRNA:   3'- -UUGUG-GUGCGCCAUCGGacaUGacau -5'
29983 5' -54.7 NC_006273.1 + 172450 0.66 0.964032
Target:  5'- uGGCACCA-GCGGUGGCCaa-AgUGUAg -3'
miRNA:   3'- -UUGUGGUgCGCCAUCGGacaUgACAU- -5'
29983 5' -54.7 NC_006273.1 + 197032 0.66 0.964032
Target:  5'- gGACGCgCACGCGGUGGUCgggGCg--- -3'
miRNA:   3'- -UUGUG-GUGCGCCAUCGGacaUGacau -5'
29983 5' -54.7 NC_006273.1 + 16418 0.66 0.956924
Target:  5'- cGCACgACGUGGUAGCgaUGcUGCUGc- -3'
miRNA:   3'- uUGUGgUGCGCCAUCGg-AC-AUGACau -5'
29983 5' -54.7 NC_006273.1 + 199470 0.66 0.956924
Target:  5'- cGCGCCACgGCGGgucguUGGCucccgCUGUGCUGg- -3'
miRNA:   3'- uUGUGGUG-CGCC-----AUCG-----GACAUGACau -5'
29983 5' -54.7 NC_006273.1 + 173796 0.66 0.953034
Target:  5'- gGACGCgCGCGCGGUGGCCa-------- -3'
miRNA:   3'- -UUGUG-GUGCGCCAUCGGacaugacau -5'
29983 5' -54.7 NC_006273.1 + 13585 0.66 0.953034
Target:  5'- -cCGCCGgGCGGcccgGGCCgccGUGCUGg- -3'
miRNA:   3'- uuGUGGUgCGCCa---UCGGa--CAUGACau -5'
29983 5' -54.7 NC_006273.1 + 94143 0.67 0.948914
Target:  5'- --uGCUGCGUGGUgAGCCgGUGCUGc- -3'
miRNA:   3'- uugUGGUGCGCCA-UCGGaCAUGACau -5'
29983 5' -54.7 NC_006273.1 + 144767 0.67 0.944561
Target:  5'- aGGCACgACGCGGcGGCCgUGgccucGCUGUu -3'
miRNA:   3'- -UUGUGgUGCGCCaUCGG-ACa----UGACAu -5'
29983 5' -54.7 NC_006273.1 + 24412 0.68 0.924774
Target:  5'- aAGCGgC-CGUGGUGGCC-GUGCUGg- -3'
miRNA:   3'- -UUGUgGuGCGCCAUCGGaCAUGACau -5'
29983 5' -54.7 NC_006273.1 + 189001 0.68 0.903692
Target:  5'- uACGCgGCGCGGguaucggcgucgggGGCCUGUGCg--- -3'
miRNA:   3'- uUGUGgUGCGCCa-------------UCGGACAUGacau -5'
29983 5' -54.7 NC_006273.1 + 199591 0.68 0.90116
Target:  5'- uGCGCCAgGCGGccGCUUGUACUu-- -3'
miRNA:   3'- uUGUGGUgCGCCauCGGACAUGAcau -5'
29983 5' -54.7 NC_006273.1 + 192238 0.69 0.873822
Target:  5'- uACGCCACGCGGU-GCCUaacGCgGUAu -3'
miRNA:   3'- uUGUGGUGCGCCAuCGGAca-UGaCAU- -5'
29983 5' -54.7 NC_006273.1 + 2260 0.69 0.858831
Target:  5'- cGCGCCAUGCuGGUGGUg-GUGCUGg- -3'
miRNA:   3'- uUGUGGUGCG-CCAUCGgaCAUGACau -5'
29983 5' -54.7 NC_006273.1 + 197153 0.69 0.858831
Target:  5'- cGCGCCAUGCuGGUGGUg-GUGCUGg- -3'
miRNA:   3'- uUGUGGUGCG-CCAUCGgaCAUGACau -5'
29983 5' -54.7 NC_006273.1 + 200639 0.7 0.851025
Target:  5'- aGGCugUGCGCGccGGCCUGUugUGUc -3'
miRNA:   3'- -UUGugGUGCGCcaUCGGACAugACAu -5'
29983 5' -54.7 NC_006273.1 + 5518 0.7 0.825588
Target:  5'- gAACACCACGCGGUccggcucAGCCcgcGUGCg--- -3'
miRNA:   3'- -UUGUGGUGCGCCA-------UCGGa--CAUGacau -5'
29983 5' -54.7 NC_006273.1 + 88540 0.74 0.622876
Target:  5'- cAACACCAcCGUGGUAGCCaUGgccCUGUGc -3'
miRNA:   3'- -UUGUGGU-GCGCCAUCGG-ACau-GACAU- -5'
29983 5' -54.7 NC_006273.1 + 3379 1.05 0.008976
Target:  5'- cAACACCACGCGGUAGCCUGUACUGUAa -3'
miRNA:   3'- -UUGUGGUGCGCCAUCGGACAUGACAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.