miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29985 3' -58.5 NC_006273.1 + 30685 0.66 0.896696
Target:  5'- -cUCgGGGCUcGC-CGGCgacaCCCAAGGCc -3'
miRNA:   3'- gaAGgUCUGA-CGuGCCG----GGGUUCCGc -5'
29985 3' -58.5 NC_006273.1 + 197816 0.66 0.896696
Target:  5'- ---gCAGACUGCugaaGGCCacucaacgaCGAGGCGc -3'
miRNA:   3'- gaagGUCUGACGug--CCGGg--------GUUCCGC- -5'
29985 3' -58.5 NC_006273.1 + 208331 0.66 0.890328
Target:  5'- aCUUUCGGGCUcGC-CGGCCCUu--GCGc -3'
miRNA:   3'- -GAAGGUCUGA-CGuGCCGGGGuucCGC- -5'
29985 3' -58.5 NC_006273.1 + 126749 0.66 0.890328
Target:  5'- -gUCCGGcaggcccugacGCUGCGCguGGUCCaGAGGCGc -3'
miRNA:   3'- gaAGGUC-----------UGACGUG--CCGGGgUUCCGC- -5'
29985 3' -58.5 NC_006273.1 + 61426 0.66 0.888376
Target:  5'- --gCCcGGCUGCGCcucgaacucuaccaGGCCCUcGGGCa -3'
miRNA:   3'- gaaGGuCUGACGUG--------------CCGGGGuUCCGc -5'
29985 3' -58.5 NC_006273.1 + 158637 0.66 0.88375
Target:  5'- -gUCCGaAgaGCACGGCCUCGuuGGUGa -3'
miRNA:   3'- gaAGGUcUgaCGUGCCGGGGUu-CCGC- -5'
29985 3' -58.5 NC_006273.1 + 222176 0.66 0.88375
Target:  5'- --aCCAGACgcuguaacgccGCACGGgCCCGuagcGGGCu -3'
miRNA:   3'- gaaGGUCUGa----------CGUGCCgGGGU----UCCGc -5'
29985 3' -58.5 NC_006273.1 + 90064 0.66 0.88375
Target:  5'- ---aCAGGCcucGCACaGCCCCGcGGCGc -3'
miRNA:   3'- gaagGUCUGa--CGUGcCGGGGUuCCGC- -5'
29985 3' -58.5 NC_006273.1 + 197344 0.66 0.883081
Target:  5'- gCUUCauCAGACUGCGuacgcuuUGGagcgucagaCCCAGGGCGc -3'
miRNA:   3'- -GAAG--GUCUGACGU-------GCCg--------GGGUUCCGC- -5'
29985 3' -58.5 NC_006273.1 + 208791 0.66 0.883081
Target:  5'- -aUgCAGACcaccaugUGCAUGGgCCCA-GGCGa -3'
miRNA:   3'- gaAgGUCUG-------ACGUGCCgGGGUuCCGC- -5'
29985 3' -58.5 NC_006273.1 + 222505 0.66 0.876966
Target:  5'- aCUUCCAGAC-GUuCGGCgucgUCCAcGGCGu -3'
miRNA:   3'- -GAAGGUCUGaCGuGCCG----GGGUuCCGC- -5'
29985 3' -58.5 NC_006273.1 + 177334 0.66 0.874892
Target:  5'- gUUCCAGGCgGCAcCGGCgaUCCAAaacgacguggaaauGGCGg -3'
miRNA:   3'- gAAGGUCUGaCGU-GCCG--GGGUU--------------CCGC- -5'
29985 3' -58.5 NC_006273.1 + 49147 0.66 0.869982
Target:  5'- --gCCAGACgGUagACGGCgUCCAuGGCGg -3'
miRNA:   3'- gaaGGUCUGaCG--UGCCG-GGGUuCCGC- -5'
29985 3' -58.5 NC_006273.1 + 85540 0.66 0.869982
Target:  5'- -gUCCAGACacaAgGGCCCCAcuAGGUu -3'
miRNA:   3'- gaAGGUCUGacgUgCCGGGGU--UCCGc -5'
29985 3' -58.5 NC_006273.1 + 120825 0.66 0.869982
Target:  5'- -cUUCGGGC-GCGacgguggacuCGGCCUUAAGGCGg -3'
miRNA:   3'- gaAGGUCUGaCGU----------GCCGGGGUUCCGC- -5'
29985 3' -58.5 NC_006273.1 + 66626 0.66 0.869982
Target:  5'- ---aCAGACUGCAagGGUCCCuucacucAGGUGg -3'
miRNA:   3'- gaagGUCUGACGUg-CCGGGGu------UCCGC- -5'
29985 3' -58.5 NC_006273.1 + 220326 0.66 0.867848
Target:  5'- --cCCAGACUuuauuaaaaaggcaGCuCGgcacGCCCCGGGGCGu -3'
miRNA:   3'- gaaGGUCUGA--------------CGuGC----CGGGGUUCCGC- -5'
29985 3' -58.5 NC_006273.1 + 44434 0.67 0.855427
Target:  5'- ---gUAGGaggGCAcCGuGCCCCGAGGCGg -3'
miRNA:   3'- gaagGUCUga-CGU-GC-CGGGGUUCCGC- -5'
29985 3' -58.5 NC_006273.1 + 94515 0.67 0.855427
Target:  5'- --gCCAGGCggGCACcucgcGCCCCGAGaaGCGg -3'
miRNA:   3'- gaaGGUCUGa-CGUGc----CGGGGUUC--CGC- -5'
29985 3' -58.5 NC_006273.1 + 40184 0.67 0.854679
Target:  5'- uCUUuuGGAggauguuCUGCACGGCgUCCGAcGGCGu -3'
miRNA:   3'- -GAAggUCU-------GACGUGCCG-GGGUU-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.