Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29985 | 3' | -58.5 | NC_006273.1 | + | 39166 | 0.67 | 0.832214 |
Target: 5'- --gCCGGGCUGCgGCGGUgcUCCGAgcGGCGu -3' miRNA: 3'- gaaGGUCUGACG-UGCCG--GGGUU--CCGC- -5' |
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29985 | 3' | -58.5 | NC_006273.1 | + | 235072 | 0.69 | 0.720571 |
Target: 5'- --gCCAGACaagacgcggGCGCaagggaggagucgcgGGCCCCGGGGCa -3' miRNA: 3'- gaaGGUCUGa--------CGUG---------------CCGGGGUUCCGc -5' |
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29985 | 3' | -58.5 | NC_006273.1 | + | 29402 | 0.69 | 0.7357 |
Target: 5'- -gUCgCAGGC-GUagACGGCCCCGguauAGGCGa -3' miRNA: 3'- gaAG-GUCUGaCG--UGCCGGGGU----UCCGC- -5' |
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29985 | 3' | -58.5 | NC_006273.1 | + | 94116 | 0.68 | 0.77252 |
Target: 5'- --cCUAGGgaGCGCGaGCCCCGugccGGGCa -3' miRNA: 3'- gaaGGUCUgaCGUGC-CGGGGU----UCCGc -5' |
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29985 | 3' | -58.5 | NC_006273.1 | + | 94959 | 0.68 | 0.781456 |
Target: 5'- gCUUCCGGGuCUcGCgGCGGCuCCCucucGGCGg -3' miRNA: 3'- -GAAGGUCU-GA-CG-UGCCG-GGGuu--CCGC- -5' |
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29985 | 3' | -58.5 | NC_006273.1 | + | 140850 | 0.68 | 0.798951 |
Target: 5'- ---aCAGGCggUGCGCGGCCgcuucUCGGGGCGc -3' miRNA: 3'- gaagGUCUG--ACGUGCCGG-----GGUUCCGC- -5' |
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29985 | 3' | -58.5 | NC_006273.1 | + | 49885 | 0.68 | 0.804946 |
Target: 5'- ---aCAGACggUGCccaucugcccacgaAgGGCCCCAGGGCGc -3' miRNA: 3'- gaagGUCUG--ACG--------------UgCCGGGGUUCCGC- -5' |
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29985 | 3' | -58.5 | NC_006273.1 | + | 203996 | 0.68 | 0.807494 |
Target: 5'- cCUUCCGGug-GCGCGGUgccgaccucggaCCCAGGGaCGu -3' miRNA: 3'- -GAAGGUCugaCGUGCCG------------GGGUUCC-GC- -5' |
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29985 | 3' | -58.5 | NC_006273.1 | + | 187533 | 0.67 | 0.824132 |
Target: 5'- -gUCC-GACUcccgccGUACGGCgCCGAGGCc -3' miRNA: 3'- gaAGGuCUGA------CGUGCCGgGGUUCCGc -5' |
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29985 | 3' | -58.5 | NC_006273.1 | + | 241 | 0.69 | 0.720571 |
Target: 5'- --gCCAGACaagacgcggGCGCaagggaggagucgcgGGCCCCGGGGCa -3' miRNA: 3'- gaaGGUCUGa--------CGUG---------------CCGGGGUUCCGc -5' |
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29985 | 3' | -58.5 | NC_006273.1 | + | 72540 | 0.7 | 0.711022 |
Target: 5'- cCUUCCcggcgugccgacgcaAGGCUGCGaugaGGCCCCGcagcugcGGCGa -3' miRNA: 3'- -GAAGG---------------UCUGACGUg---CCGGGGUu------CCGC- -5' |
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29985 | 3' | -58.5 | NC_006273.1 | + | 33223 | 0.71 | 0.648788 |
Target: 5'- --cCCGGuaGC-GCACcgagGGCCCCGGGGCGg -3' miRNA: 3'- gaaGGUC--UGaCGUG----CCGGGGUUCCGC- -5' |
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29985 | 3' | -58.5 | NC_006273.1 | + | 3 | 0.77 | 0.315633 |
Target: 5'- aUUCCGGGCcgugUGCugGGuCCCCGagGGGCGg -3' miRNA: 3'- gAAGGUCUG----ACGugCC-GGGGU--UCCGC- -5' |
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29985 | 3' | -58.5 | NC_006273.1 | + | 234834 | 0.77 | 0.315633 |
Target: 5'- aUUCCGGGCcgugUGCugGGuCCCCGagGGGCGg -3' miRNA: 3'- gAAGGUCUG----ACGugCC-GGGGU--UCCGC- -5' |
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29985 | 3' | -58.5 | NC_006273.1 | + | 120744 | 0.75 | 0.423748 |
Target: 5'- --gCCAGGaUGC-CGGCCgCCAGGGCGg -3' miRNA: 3'- gaaGGUCUgACGuGCCGG-GGUUCCGC- -5' |
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29985 | 3' | -58.5 | NC_006273.1 | + | 229436 | 0.73 | 0.5039 |
Target: 5'- -aUCCAcGACUcGCACGGCCUguGGuGCGa -3' miRNA: 3'- gaAGGU-CUGA-CGUGCCGGGguUC-CGC- -5' |
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29985 | 3' | -58.5 | NC_006273.1 | + | 120558 | 0.73 | 0.513224 |
Target: 5'- -gUCgAGGCgaUGCAUGGCCCgggCAAGGCGu -3' miRNA: 3'- gaAGgUCUG--ACGUGCCGGG---GUUCCGC- -5' |
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29985 | 3' | -58.5 | NC_006273.1 | + | 73411 | 0.72 | 0.540643 |
Target: 5'- --cCCAGACUGCggucgcgAUGGCCCgGAGcGCGc -3' miRNA: 3'- gaaGGUCUGACG-------UGCCGGGgUUC-CGC- -5' |
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29985 | 3' | -58.5 | NC_006273.1 | + | 57195 | 0.72 | 0.560801 |
Target: 5'- --aCCAGAauCUGCACGGUgCCCGuaGGGCa -3' miRNA: 3'- gaaGGUCU--GACGUGCCG-GGGU--UCCGc -5' |
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29985 | 3' | -58.5 | NC_006273.1 | + | 232960 | 0.71 | 0.636021 |
Target: 5'- -gUCCAGcucgggcagcagccGCcGCGCGGCCUCGGcGGCGg -3' miRNA: 3'- gaAGGUC--------------UGaCGUGCCGGGGUU-CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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