Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29985 | 5' | -53.4 | NC_006273.1 | + | 37416 | 0.66 | 0.985118 |
Target: 5'- gAGCGCCGggGCGCGcCGCUaCUUGg-- -3' miRNA: 3'- -UCGCGGUa-UGUGCaGCGAcGGAUauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 32537 | 0.66 | 0.985118 |
Target: 5'- cAGCGCUgaugGCACGUUGCcgGCUUcgAAc -3' miRNA: 3'- -UCGCGGua--UGUGCAGCGa-CGGAuaUU- -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 69807 | 0.66 | 0.983279 |
Target: 5'- cAGcCGCCGUcaGCGUCGCU-CCUAc-- -3' miRNA: 3'- -UC-GCGGUAugUGCAGCGAcGGAUauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 2040 | 0.66 | 0.983279 |
Target: 5'- cGCGCCGUGCGCGauggcaGgaGCCg---- -3' miRNA: 3'- uCGCGGUAUGUGCag----CgaCGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 196933 | 0.66 | 0.983279 |
Target: 5'- cGCGCCGUGCGCGauggcaGgaGCCg---- -3' miRNA: 3'- uCGCGGUAUGUGCag----CgaCGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 141755 | 0.66 | 0.983279 |
Target: 5'- cGGCGCCAguggaUGCGCGaaGCUGCg----- -3' miRNA: 3'- -UCGCGGU-----AUGUGCagCGACGgauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 225511 | 0.66 | 0.981273 |
Target: 5'- cGUGCCGUGUACGUUacucaCUGCCUGUu- -3' miRNA: 3'- uCGCGGUAUGUGCAGc----GACGGAUAuu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 23505 | 0.66 | 0.979093 |
Target: 5'- gAGCGCg--GCACGcCGUUGCCa---- -3' miRNA: 3'- -UCGCGguaUGUGCaGCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 120876 | 0.66 | 0.979093 |
Target: 5'- -cCGCCGUGCACGcCGUcGCCg---- -3' miRNA: 3'- ucGCGGUAUGUGCaGCGaCGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 45983 | 0.66 | 0.979093 |
Target: 5'- uGGUGCC-UGCGCGU-GCUGCUa---- -3' miRNA: 3'- -UCGCGGuAUGUGCAgCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 1250 | 0.66 | 0.976729 |
Target: 5'- cGCGCCAUGCGCaagugGUCGCaGCg----- -3' miRNA: 3'- uCGCGGUAUGUG-----CAGCGaCGgauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 198493 | 0.66 | 0.976729 |
Target: 5'- cGGCGCCGUGuucgccUACGaCGCgcaagaggacUGCCUGUAc -3' miRNA: 3'- -UCGCGGUAU------GUGCaGCG----------ACGGAUAUu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 196143 | 0.66 | 0.976729 |
Target: 5'- cGCGCCAUGCGCaagugGUCGCaGCg----- -3' miRNA: 3'- uCGCGGUAUGUG-----CAGCGaCGgauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 136985 | 0.66 | 0.976729 |
Target: 5'- cGCGCCGUGCGCGacgagaucuaCGCUGUaCUAc-- -3' miRNA: 3'- uCGCGGUAUGUGCa---------GCGACG-GAUauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 108206 | 0.67 | 0.974175 |
Target: 5'- gGGCGCCAUGgAUGccgacgagcCGCUGUUUGUGGa -3' miRNA: 3'- -UCGCGGUAUgUGCa--------GCGACGGAUAUU- -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 70481 | 0.67 | 0.973909 |
Target: 5'- cGCGCCAccucgaaUACACGUCGCgaGaCCg---- -3' miRNA: 3'- uCGCGGU-------AUGUGCAGCGa-C-GGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 204734 | 0.67 | 0.971423 |
Target: 5'- aAGcCGCCcgGCGCGUCGuCUGUgUGc-- -3' miRNA: 3'- -UC-GCGGuaUGUGCAGC-GACGgAUauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 97367 | 0.67 | 0.971423 |
Target: 5'- cGGCGCCGccuaGCGUCaCUGCCUu--- -3' miRNA: 3'- -UCGCGGUaug-UGCAGcGACGGAuauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 158676 | 0.67 | 0.971423 |
Target: 5'- cGGCG-CAUGCGgGUCGCagaaaaagUGCUUGUAGa -3' miRNA: 3'- -UCGCgGUAUGUgCAGCG--------ACGGAUAUU- -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 192361 | 0.67 | 0.968466 |
Target: 5'- cGCgGCCGUgGCGCGUCGCgGCUa---- -3' miRNA: 3'- uCG-CGGUA-UGUGCAGCGaCGGauauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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