Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29985 | 5' | -53.4 | NC_006273.1 | + | 195634 | 1.06 | 0.009188 |
Target: 5'- aAGCGCCAUACACGUCGCUGCCUAUAAa -3' miRNA: 3'- -UCGCGGUAUGUGCAGCGACGGAUAUU- -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 742 | 1.06 | 0.009188 |
Target: 5'- aAGCGCCAUACACGUCGCUGCCUAUAAa -3' miRNA: 3'- -UCGCGGUAUGUGCAGCGACGGAUAUU- -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 1854 | 0.74 | 0.685293 |
Target: 5'- cGGCGCCGcacccCGCGUCGCUGCUg---- -3' miRNA: 3'- -UCGCGGUau---GUGCAGCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 196746 | 0.74 | 0.685293 |
Target: 5'- cGGCGCCGcacccCGCGUCGCUGCUg---- -3' miRNA: 3'- -UCGCGGUau---GUGCAGCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 138037 | 0.74 | 0.715703 |
Target: 5'- cGGCGCCGgcgcCugGUUGCUGCCg---- -3' miRNA: 3'- -UCGCGGUau--GugCAGCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 61750 | 0.73 | 0.762891 |
Target: 5'- gAGCGCCGUGCGCGccuucgugggugCGUUGCCg---- -3' miRNA: 3'- -UCGCGGUAUGUGCa-----------GCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 162792 | 0.72 | 0.783673 |
Target: 5'- cAGCgGCC--GCAUGUCGCUGCCg---- -3' miRNA: 3'- -UCG-CGGuaUGUGCAGCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 101964 | 0.72 | 0.792903 |
Target: 5'- cGCGCCGU-CGCGUCGCUugacgGCCa---- -3' miRNA: 3'- uCGCGGUAuGUGCAGCGA-----CGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 114575 | 0.71 | 0.852897 |
Target: 5'- uGGCGCUcUACGCgGUCGCcuuUGCCUGg-- -3' miRNA: 3'- -UCGCGGuAUGUG-CAGCG---ACGGAUauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 171302 | 0.71 | 0.860712 |
Target: 5'- cGGCGCCAUuggaACGUUGC-GCCUGc-- -3' miRNA: 3'- -UCGCGGUAug--UGCAGCGaCGGAUauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 166577 | 0.71 | 0.860712 |
Target: 5'- cGGCGCCGccggcUACGCGuccggguuccagUCGCUGCCa---- -3' miRNA: 3'- -UCGCGGU-----AUGUGC------------AGCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 117837 | 0.71 | 0.860712 |
Target: 5'- cGGCGCCGggaUACAUGacgggCGCUGCCg---- -3' miRNA: 3'- -UCGCGGU---AUGUGCa----GCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 101369 | 0.7 | 0.868316 |
Target: 5'- cGGCgGCCGUGCGCaUCGCcUGCCUc--- -3' miRNA: 3'- -UCG-CGGUAUGUGcAGCG-ACGGAuauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 87382 | 0.7 | 0.875705 |
Target: 5'- cGCGCCAacACGCGgauuaacgCGCUGCCUu--- -3' miRNA: 3'- uCGCGGUa-UGUGCa-------GCGACGGAuauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 213072 | 0.7 | 0.889811 |
Target: 5'- cGGCGUuCGUugGCGcCGCUGCCg---- -3' miRNA: 3'- -UCGCG-GUAugUGCaGCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 21570 | 0.7 | 0.89652 |
Target: 5'- -uCGUCGUGCcCGUCgGCUGCCUGUu- -3' miRNA: 3'- ucGCGGUAUGuGCAG-CGACGGAUAuu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 38910 | 0.69 | 0.907385 |
Target: 5'- cGCGCCGUGCcgaaccacucguccGCGUCGCgcGCCgcUAGg -3' miRNA: 3'- uCGCGGUAUG--------------UGCAGCGa-CGGauAUU- -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 233802 | 0.69 | 0.911657 |
Target: 5'- cGCGCCGUGCcgaaaccacucguccGCGUCGCgcGCCgcUAGg -3' miRNA: 3'- uCGCGGUAUG---------------UGCAGCGa-CGGauAUU- -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 191440 | 0.69 | 0.915226 |
Target: 5'- gGGCGCUgcuguugcggAUGCugGUCGUUGgCCUGa-- -3' miRNA: 3'- -UCGCGG----------UAUGugCAGCGAC-GGAUauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 36912 | 0.69 | 0.915226 |
Target: 5'- cGGCGCCGUACGCGUCaCgaacaCCUGg-- -3' miRNA: 3'- -UCGCGGUAUGUGCAGcGac---GGAUauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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