miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29985 5' -53.4 NC_006273.1 + 75573 0.67 0.968466
Target:  5'- cGGCGaCUGUGCGCGcCGCUGgCCa---- -3'
miRNA:   3'- -UCGC-GGUAUGUGCaGCGAC-GGauauu -5'
29985 5' -53.4 NC_006273.1 + 229424 0.67 0.965299
Target:  5'- uGGCGUCGUGuaaucCACGacUCGCacgGCCUGUGGu -3'
miRNA:   3'- -UCGCGGUAU-----GUGC--AGCGa--CGGAUAUU- -5'
29985 5' -53.4 NC_006273.1 + 154559 0.67 0.965299
Target:  5'- uGCGCCccgcgGCcgACGUCGUUGCCa---- -3'
miRNA:   3'- uCGCGGua---UG--UGCAGCGACGGauauu -5'
29985 5' -53.4 NC_006273.1 + 76521 0.67 0.965299
Target:  5'- uGCGCgaAUGCACGUCGCcGCUc---- -3'
miRNA:   3'- uCGCGg-UAUGUGCAGCGaCGGauauu -5'
29985 5' -53.4 NC_006273.1 + 70327 0.67 0.965299
Target:  5'- cGCGCCGUGCGucugccCGUgagcacCGCUGCCg---- -3'
miRNA:   3'- uCGCGGUAUGU------GCA------GCGACGGauauu -5'
29985 5' -53.4 NC_006273.1 + 207990 0.67 0.96497
Target:  5'- --aGCCAUGCugaggucuugucgGCGUCGCUGCUg---- -3'
miRNA:   3'- ucgCGGUAUG-------------UGCAGCGACGGauauu -5'
29985 5' -53.4 NC_006273.1 + 172675 0.67 0.961914
Target:  5'- uAGUaGCCGUugcACGCGUCGCgGCgUAUGc -3'
miRNA:   3'- -UCG-CGGUA---UGUGCAGCGaCGgAUAUu -5'
29985 5' -53.4 NC_006273.1 + 68059 0.67 0.961914
Target:  5'- cAGCGCCGccgugGC-CGcCGCUGCCg---- -3'
miRNA:   3'- -UCGCGGUa----UGuGCaGCGACGGauauu -5'
29985 5' -53.4 NC_006273.1 + 163162 0.67 0.958306
Target:  5'- gAGCGCCAUcuggauGCGCGcUCGCUggugGCCg---- -3'
miRNA:   3'- -UCGCGGUA------UGUGC-AGCGA----CGGauauu -5'
29985 5' -53.4 NC_006273.1 + 105475 0.67 0.958306
Target:  5'- cGGCGCC--GCAgGagaCGCUGCCUAc-- -3'
miRNA:   3'- -UCGCGGuaUGUgCa--GCGACGGAUauu -5'
29985 5' -53.4 NC_006273.1 + 187285 0.68 0.954471
Target:  5'- cGCuGaCCAUGCgGCGUCGUUGCCg---- -3'
miRNA:   3'- uCG-C-GGUAUG-UGCAGCGACGGauauu -5'
29985 5' -53.4 NC_006273.1 + 101558 0.68 0.954471
Target:  5'- aAGCGCCGUGCGCGacgggCGCgGCg----- -3'
miRNA:   3'- -UCGCGGUAUGUGCa----GCGaCGgauauu -5'
29985 5' -53.4 NC_006273.1 + 30034 0.68 0.950405
Target:  5'- aGGCGCUGUACAUucUGCUGCCc---- -3'
miRNA:   3'- -UCGCGGUAUGUGcaGCGACGGauauu -5'
29985 5' -53.4 NC_006273.1 + 196158 0.68 0.950405
Target:  5'- cGCGCCAUGcCGCGUgaCGCUGaCCc---- -3'
miRNA:   3'- uCGCGGUAU-GUGCA--GCGAC-GGauauu -5'
29985 5' -53.4 NC_006273.1 + 156596 0.68 0.946103
Target:  5'- aAGCaGCCGUGCGCcuGUCGC-GCCUc--- -3'
miRNA:   3'- -UCG-CGGUAUGUG--CAGCGaCGGAuauu -5'
29985 5' -53.4 NC_006273.1 + 2260 0.68 0.946103
Target:  5'- cGCGCCAUGCugGUgGUggUGCUg---- -3'
miRNA:   3'- uCGCGGUAUGugCAgCG--ACGGauauu -5'
29985 5' -53.4 NC_006273.1 + 197153 0.68 0.946103
Target:  5'- cGCGCCAUGCugGUgGUggUGCUg---- -3'
miRNA:   3'- uCGCGGUAUGugCAgCG--ACGGauauu -5'
29985 5' -53.4 NC_006273.1 + 118782 0.68 0.941562
Target:  5'- cGuCGCCGUcCAUGUCGCUGCgcagAUAAg -3'
miRNA:   3'- uC-GCGGUAuGUGCAGCGACGga--UAUU- -5'
29985 5' -53.4 NC_006273.1 + 174078 0.68 0.941562
Target:  5'- --gGCCA-GCACG-CGCUGCCUGc-- -3'
miRNA:   3'- ucgCGGUaUGUGCaGCGACGGAUauu -5'
29985 5' -53.4 NC_006273.1 + 130292 0.68 0.936781
Target:  5'- aAGCGCCGUGCGCGUUGgacGCUa---- -3'
miRNA:   3'- -UCGCGGUAUGUGCAGCga-CGGauauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.