Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29985 | 5' | -53.4 | NC_006273.1 | + | 427 | 0.69 | 0.931242 |
Target: 5'- cGCGCC--GCACGUCGCUuuuauucGCCg---- -3' miRNA: 3'- uCGCGGuaUGUGCAGCGA-------CGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 742 | 1.06 | 0.009188 |
Target: 5'- aAGCGCCAUACACGUCGCUGCCUAUAAa -3' miRNA: 3'- -UCGCGGUAUGUGCAGCGACGGAUAUU- -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 1250 | 0.66 | 0.976729 |
Target: 5'- cGCGCCAUGCGCaagugGUCGCaGCg----- -3' miRNA: 3'- uCGCGGUAUGUG-----CAGCGaCGgauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 1854 | 0.74 | 0.685293 |
Target: 5'- cGGCGCCGcacccCGCGUCGCUGCUg---- -3' miRNA: 3'- -UCGCGGUau---GUGCAGCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 1926 | 0.69 | 0.931757 |
Target: 5'- uGGCGCUggGCGCGgUGCUGCCc---- -3' miRNA: 3'- -UCGCGGuaUGUGCaGCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 2040 | 0.66 | 0.983279 |
Target: 5'- cGCGCCGUGCGCGauggcaGgaGCCg---- -3' miRNA: 3'- uCGCGGUAUGUGCag----CgaCGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 2260 | 0.68 | 0.946103 |
Target: 5'- cGCGCCAUGCugGUgGUggUGCUg---- -3' miRNA: 3'- uCGCGGUAUGugCAgCG--ACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 21570 | 0.7 | 0.89652 |
Target: 5'- -uCGUCGUGCcCGUCgGCUGCCUGUu- -3' miRNA: 3'- ucGCGGUAUGuGCAG-CGACGGAUAuu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 23505 | 0.66 | 0.979093 |
Target: 5'- gAGCGCg--GCACGcCGUUGCCa---- -3' miRNA: 3'- -UCGCGguaUGUGCaGCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 30034 | 0.68 | 0.950405 |
Target: 5'- aGGCGCUGUACAUucUGCUGCCc---- -3' miRNA: 3'- -UCGCGGUAUGUGcaGCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 30856 | 0.69 | 0.915226 |
Target: 5'- uGGCGCCAggugaGC-CGUcCGCUGCCg---- -3' miRNA: 3'- -UCGCGGUa----UGuGCA-GCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 32537 | 0.66 | 0.985118 |
Target: 5'- cAGCGCUgaugGCACGUUGCcgGCUUcgAAc -3' miRNA: 3'- -UCGCGGua--UGUGCAGCGa-CGGAuaUU- -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 36912 | 0.69 | 0.915226 |
Target: 5'- cGGCGCCGUACGCGUCaCgaacaCCUGg-- -3' miRNA: 3'- -UCGCGGUAUGUGCAGcGac---GGAUauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 37416 | 0.66 | 0.985118 |
Target: 5'- gAGCGCCGggGCGCGcCGCUaCUUGg-- -3' miRNA: 3'- -UCGCGGUa-UGUGCaGCGAcGGAUauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 38910 | 0.69 | 0.907385 |
Target: 5'- cGCGCCGUGCcgaaccacucguccGCGUCGCgcGCCgcUAGg -3' miRNA: 3'- uCGCGGUAUG--------------UGCAGCGa-CGGauAUU- -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 45983 | 0.66 | 0.979093 |
Target: 5'- uGGUGCC-UGCGCGU-GCUGCUa---- -3' miRNA: 3'- -UCGCGGuAUGUGCAgCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 61750 | 0.73 | 0.762891 |
Target: 5'- gAGCGCCGUGCGCGccuucgugggugCGUUGCCg---- -3' miRNA: 3'- -UCGCGGUAUGUGCa-----------GCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 68059 | 0.67 | 0.961914 |
Target: 5'- cAGCGCCGccgugGC-CGcCGCUGCCg---- -3' miRNA: 3'- -UCGCGGUa----UGuGCaGCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 69807 | 0.66 | 0.983279 |
Target: 5'- cAGcCGCCGUcaGCGUCGCU-CCUAc-- -3' miRNA: 3'- -UC-GCGGUAugUGCAGCGAcGGAUauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 70327 | 0.67 | 0.965299 |
Target: 5'- cGCGCCGUGCGucugccCGUgagcacCGCUGCCg---- -3' miRNA: 3'- uCGCGGUAUGU------GCA------GCGACGGauauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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