Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29985 | 5' | -53.4 | NC_006273.1 | + | 154559 | 0.67 | 0.965299 |
Target: 5'- uGCGCCccgcgGCcgACGUCGUUGCCa---- -3' miRNA: 3'- uCGCGGua---UG--UGCAGCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 184936 | 0.69 | 0.931757 |
Target: 5'- cGGCGuCCAggaugaGCuCGUCGCUGCCg---- -3' miRNA: 3'- -UCGC-GGUa-----UGuGCAGCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 196818 | 0.69 | 0.931757 |
Target: 5'- uGGCGCUggGCGCGgUGCUGCCc---- -3' miRNA: 3'- -UCGCGGuaUGUGCaGCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 130292 | 0.68 | 0.936781 |
Target: 5'- aAGCGCCGUGCGCGUUGgacGCUa---- -3' miRNA: 3'- -UCGCGGUAUGUGCAGCga-CGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 118782 | 0.68 | 0.941562 |
Target: 5'- cGuCGCCGUcCAUGUCGCUGCgcagAUAAg -3' miRNA: 3'- uC-GCGGUAuGUGCAGCGACGga--UAUU- -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 197153 | 0.68 | 0.946103 |
Target: 5'- cGCGCCAUGCugGUgGUggUGCUg---- -3' miRNA: 3'- uCGCGGUAUGugCAgCG--ACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 101558 | 0.68 | 0.954471 |
Target: 5'- aAGCGCCGUGCGCGacgggCGCgGCg----- -3' miRNA: 3'- -UCGCGGUAUGUGCa----GCGaCGgauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 105475 | 0.67 | 0.958306 |
Target: 5'- cGGCGCC--GCAgGagaCGCUGCCUAc-- -3' miRNA: 3'- -UCGCGGuaUGUgCa--GCGACGGAUauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 76521 | 0.67 | 0.965299 |
Target: 5'- uGCGCgaAUGCACGUCGCcGCUc---- -3' miRNA: 3'- uCGCGg-UAUGUGCAGCGaCGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 195320 | 0.69 | 0.931242 |
Target: 5'- cGCGCC--GCACGUCGCUuuuauucGCCg---- -3' miRNA: 3'- uCGCGGuaUGUGCAGCGA-------CGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 36912 | 0.69 | 0.915226 |
Target: 5'- cGGCGCCGUACGCGUCaCgaacaCCUGg-- -3' miRNA: 3'- -UCGCGGUAUGUGCAGcGac---GGAUauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 30856 | 0.69 | 0.915226 |
Target: 5'- uGGCGCCAggugaGC-CGUcCGCUGCCg---- -3' miRNA: 3'- -UCGCGGUa----UGuGCA-GCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 196746 | 0.74 | 0.685293 |
Target: 5'- cGGCGCCGcacccCGCGUCGCUGCUg---- -3' miRNA: 3'- -UCGCGGUau---GUGCAGCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 138037 | 0.74 | 0.715703 |
Target: 5'- cGGCGCCGgcgcCugGUUGCUGCCg---- -3' miRNA: 3'- -UCGCGGUau--GugCAGCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 61750 | 0.73 | 0.762891 |
Target: 5'- gAGCGCCGUGCGCGccuucgugggugCGUUGCCg---- -3' miRNA: 3'- -UCGCGGUAUGUGCa-----------GCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 162792 | 0.72 | 0.783673 |
Target: 5'- cAGCgGCC--GCAUGUCGCUGCCg---- -3' miRNA: 3'- -UCG-CGGuaUGUGCAGCGACGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 101964 | 0.72 | 0.792903 |
Target: 5'- cGCGCCGU-CGCGUCGCUugacgGCCa---- -3' miRNA: 3'- uCGCGGUAuGUGCAGCGA-----CGGauauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 114575 | 0.71 | 0.852897 |
Target: 5'- uGGCGCUcUACGCgGUCGCcuuUGCCUGg-- -3' miRNA: 3'- -UCGCGGuAUGUG-CAGCG---ACGGAUauu -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 233802 | 0.69 | 0.911657 |
Target: 5'- cGCGCCGUGCcgaaaccacucguccGCGUCGCgcGCCgcUAGg -3' miRNA: 3'- uCGCGGUAUG---------------UGCAGCGa-CGGauAUU- -5' |
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29985 | 5' | -53.4 | NC_006273.1 | + | 191440 | 0.69 | 0.915226 |
Target: 5'- gGGCGCUgcuguugcggAUGCugGUCGUUGgCCUGa-- -3' miRNA: 3'- -UCGCGG----------UAUGugCAGCGAC-GGAUauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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