miRNA display CGI


Results 1 - 20 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 147266 0.66 0.990097
Target:  5'- uCGCUGAUGGACAAguuUGCCGCguuGCAGg -3'
miRNA:   3'- uGCGGCUGUUUGUU---GUGGCGug-CGUC- -5'
29987 3' -53.6 NC_006273.1 + 158368 0.66 0.990097
Target:  5'- uCGCgCGGCGuGCGcACGCCGCucACGCuAGa -3'
miRNA:   3'- uGCG-GCUGUuUGU-UGUGGCG--UGCG-UC- -5'
29987 3' -53.6 NC_006273.1 + 22248 0.66 0.990097
Target:  5'- uCGCCGACGGucACcAUcguGCCGCuccauCGCAGc -3'
miRNA:   3'- uGCGGCUGUU--UGuUG---UGGCGu----GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 200709 0.66 0.990097
Target:  5'- aACGCCGGCGcccaAACAUCccaaGCACGCc- -3'
miRNA:   3'- -UGCGGCUGUuug-UUGUGG----CGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 189208 0.66 0.990097
Target:  5'- uCGUCGGC--GCGAUGCCGCAgGgCGGu -3'
miRNA:   3'- uGCGGCUGuuUGUUGUGGCGUgC-GUC- -5'
29987 3' -53.6 NC_006273.1 + 2241 0.66 0.990097
Target:  5'- gGCGUCGG-GGACcgUGCCGCGCGCc- -3'
miRNA:   3'- -UGCGGCUgUUUGuuGUGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 72984 0.66 0.990097
Target:  5'- cUGCCGACAcACca-GCCauuCGCGCAGg -3'
miRNA:   3'- uGCGGCUGUuUGuugUGGc--GUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 204709 0.66 0.990097
Target:  5'- uCGCCGGCGAGCccCGagGCGCGCc- -3'
miRNA:   3'- uGCGGCUGUUUGuuGUggCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 200956 0.66 0.990097
Target:  5'- cGCGCCGcCAAACG-CAUCGCucuggcCGUGGc -3'
miRNA:   3'- -UGCGGCuGUUUGUuGUGGCGu-----GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 72550 0.66 0.990097
Target:  5'- gUGCCGAC--GCAAgGCUGCGaugaggcccCGCAGc -3'
miRNA:   3'- uGCGGCUGuuUGUUgUGGCGU---------GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 156872 0.66 0.990097
Target:  5'- gGCGcCCGGugucCGGGCGGCGCCGCAgGg-- -3'
miRNA:   3'- -UGC-GGCU----GUUUGUUGUGGCGUgCguc -5'
29987 3' -53.6 NC_006273.1 + 169823 0.66 0.990097
Target:  5'- -gGCCGGCAGGgcccCuuCGCCGCAgcUGUAGg -3'
miRNA:   3'- ugCGGCUGUUU----GuuGUGGCGU--GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 134101 0.66 0.990097
Target:  5'- gGCaCCGGCGGACAcaucaucauggGCACUGCGgGCu- -3'
miRNA:   3'- -UGcGGCUGUUUGU-----------UGUGGCGUgCGuc -5'
29987 3' -53.6 NC_006273.1 + 64195 0.66 0.990097
Target:  5'- gACGgaagCGACGAGCcuacugcaccGACAUCGCGCGCu- -3'
miRNA:   3'- -UGCg---GCUGUUUG----------UUGUGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 30592 0.66 0.990097
Target:  5'- uGCGCgaGACcGGCGGCACCG-GCGCc- -3'
miRNA:   3'- -UGCGg-CUGuUUGUUGUGGCgUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 33732 0.66 0.990097
Target:  5'- cACGCCGuguACucguGACGuAUACUGgCGCGCAGc -3'
miRNA:   3'- -UGCGGC---UGu---UUGU-UGUGGC-GUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 197134 0.66 0.990097
Target:  5'- gGCGUCGG-GGACcgUGCCGCGCGCc- -3'
miRNA:   3'- -UGCGGCUgUUUGuuGUGGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 179852 0.66 0.990097
Target:  5'- aGCGUCGACAGACggU-CCGUAgagggccaGCAGu -3'
miRNA:   3'- -UGCGGCUGUUUGuuGuGGCGUg-------CGUC- -5'
29987 3' -53.6 NC_006273.1 + 131858 0.66 0.98997
Target:  5'- -gGCCGGCuacGGCGGCcgcaucgACgGCACGCAc -3'
miRNA:   3'- ugCGGCUGu--UUGUUG-------UGgCGUGCGUc -5'
29987 3' -53.6 NC_006273.1 + 189962 0.66 0.98997
Target:  5'- -gGCCGGCGugGGCGGCucgcggagacuggGCUGCAgGCGGc -3'
miRNA:   3'- ugCGGCUGU--UUGUUG-------------UGGCGUgCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.