miRNA display CGI


Results 1 - 20 of 471 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29987 3' -53.6 NC_006273.1 + 117191 0.66 0.98398
Target:  5'- cCGCCGAgcguuCGGGCGACAgCCGCAguCAGg -3'
miRNA:   3'- uGCGGCU-----GUUUGUUGU-GGCGUgcGUC- -5'
29987 3' -53.6 NC_006273.1 + 168093 0.66 0.982078
Target:  5'- cCGCCGGC-----GCGCCaGCAUGUAGg -3'
miRNA:   3'- uGCGGCUGuuuguUGUGG-CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 21930 0.66 0.981878
Target:  5'- cCGCCGGCAucggguaGACGGCGCUaGCgGCGCu- -3'
miRNA:   3'- uGCGGCUGU-------UUGUUGUGG-CG-UGCGuc -5'
29987 3' -53.6 NC_006273.1 + 81198 0.66 0.98398
Target:  5'- uUGCUGAUAGACAcACACUGCAaauCGGg -3'
miRNA:   3'- uGCGGCUGUUUGU-UGUGGCGUgc-GUC- -5'
29987 3' -53.6 NC_006273.1 + 177927 0.66 0.983797
Target:  5'- gGCGCacaGACAaacaGACAGCcacacccgacacaGCCGCAuguUGCAGa -3'
miRNA:   3'- -UGCGg--CUGU----UUGUUG-------------UGGCGU---GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 200956 0.66 0.990097
Target:  5'- cGCGCCGcCAAACG-CAUCGCucuggcCGUGGc -3'
miRNA:   3'- -UGCGGCuGUUUGUuGUGGCGu-----GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 38134 0.66 0.98398
Target:  5'- cGCGCUcgGGCcGGCGAgGCCG-ACGCGGu -3'
miRNA:   3'- -UGCGG--CUGuUUGUUgUGGCgUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 22740 0.66 0.982078
Target:  5'- uCGCCGAgGuACggUACCGCugGgAu -3'
miRNA:   3'- uGCGGCUgUuUGuuGUGGCGugCgUc -5'
29987 3' -53.6 NC_006273.1 + 120232 0.66 0.983426
Target:  5'- -aGCCGaagcaccuggcaguGCAGGCGACcaaagcuuCCGCugGCGGc -3'
miRNA:   3'- ugCGGC--------------UGUUUGUUGu-------GGCGugCGUC- -5'
29987 3' -53.6 NC_006273.1 + 92178 0.66 0.982078
Target:  5'- aACGUCGuACAAGCuACAcaccccaaaaacCCGCGCGCc- -3'
miRNA:   3'- -UGCGGC-UGUUUGuUGU------------GGCGUGCGuc -5'
29987 3' -53.6 NC_006273.1 + 124393 0.66 0.98398
Target:  5'- aGCGCCGACA------GCCGCGCGa-- -3'
miRNA:   3'- -UGCGGCUGUuuguugUGGCGUGCguc -5'
29987 3' -53.6 NC_006273.1 + 203724 0.66 0.982078
Target:  5'- cACGCCGuCcuuGACGACGCaGCugGCc- -3'
miRNA:   3'- -UGCGGCuGu--UUGUUGUGgCGugCGuc -5'
29987 3' -53.6 NC_006273.1 + 72643 0.66 0.98398
Target:  5'- aGCGCgGGCGucgaAGCGCUugGCGCGUAGu -3'
miRNA:   3'- -UGCGgCUGUuug-UUGUGG--CGUGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 136101 0.66 0.982078
Target:  5'- gACGCCGugGgcGGCGAUcgcgcuuuugACCGCGaGCGGc -3'
miRNA:   3'- -UGCGGCugU--UUGUUG----------UGGCGUgCGUC- -5'
29987 3' -53.6 NC_006273.1 + 38534 0.66 0.98398
Target:  5'- gACGaggaCGACGGGCAcCACCGCGgucaaaagguCGCAc -3'
miRNA:   3'- -UGCg---GCUGUUUGUuGUGGCGU----------GCGUc -5'
29987 3' -53.6 NC_006273.1 + 167031 0.66 0.98398
Target:  5'- gGCGCUGAUuuGCAgcuGCACgGC-CGUGGa -3'
miRNA:   3'- -UGCGGCUGuuUGU---UGUGgCGuGCGUC- -5'
29987 3' -53.6 NC_006273.1 + 197299 0.66 0.982078
Target:  5'- gGCGCCcGCcgcCGAgGCCGCGCGgCGGc -3'
miRNA:   3'- -UGCGGcUGuuuGUUgUGGCGUGC-GUC- -5'
29987 3' -53.6 NC_006273.1 + 34603 0.66 0.98398
Target:  5'- gAUGUCGuACuuGCcguGCGCCGUAgCGCAGg -3'
miRNA:   3'- -UGCGGC-UGuuUGu--UGUGGCGU-GCGUC- -5'
29987 3' -53.6 NC_006273.1 + 151223 0.66 0.98398
Target:  5'- -gGCCGACAcGCucuGgGCCGCGcCGCu- -3'
miRNA:   3'- ugCGGCUGUuUGu--UgUGGCGU-GCGuc -5'
29987 3' -53.6 NC_006273.1 + 155190 0.66 0.982078
Target:  5'- gACGCCGAacucauGGAUcACACCagucuGUACGCGGa -3'
miRNA:   3'- -UGCGGCUg-----UUUGuUGUGG-----CGUGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.